Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq27 102 5e-17 seq121 93.3 3e-14 seq474 89.7 3e-13 seq1029 84.2 1e-11 seq1025 84.2 1e-11 >seq27 Length=1763170 Score = 102 bits (112), Expect = 5e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| |||||| || || || ||||||||||| | || ||||| | || || Sbjct 581561 CACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGGCCATCCTC 581502 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||||||||||||| ||| | || | ||| || ||||| Sbjct 581501 CAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTG 581442 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTT 33717 |||||| ||| |||| ||| | || || | | | || || |||| ||||| || Sbjct 581441 AATTTTGGCCTTC-ACATTGTCAATCGTATC-CGAGCTCTCGACCTCAAGGGTGATGGTC 581384 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| |||||||||||||| Sbjct 581383 TTCCCAGTGAGGGTTTTGACAAAGATCTGCAT 581352 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| || || || || ||||| |||| || ||||| |||| || | || Sbjct 581100 ATGGAGGGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTG 581041 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || |||||||| |||| ||||||||| ||| | || | || || ||||| ||| || Sbjct 581040 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTT 580981 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | ||| | ||| | ||| ||| || ||||| |||| ||||| || || || | Sbjct 580980 -TGCCTTAACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGG 580922 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | || || || ||||||||||| Sbjct 580921 TGAGAGTCTTGACGAAGATCTGCAT 580897 >seq121 Length=770561 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || || ||| || || || ||||||||||| | Sbjct 402987 CCACCCCTCAGCCGCAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCC 403046 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | || ||||| ||||| || | |||||||||||| | Sbjct 403047 AGCGTGCGTGCATCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGATCCACAGAG 403106 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || || | |||| || | ||||||| ||||| Sbjct 403107 ATTCCTTCCTTATCCTGAATCTT-TGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 403165 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || || || || ||||||||||||||||| Sbjct 403166 CTCCAAAGTGATCGTCTTCCCCGTCAAAGTCTTTACAAAGATCTGCAT 403213 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| || || | |||| || |||||| ||| || |||||||||||||| | Sbjct 403215 CCGCCTCTTAATCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAATCTGCT 403274 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | || ||||| |||||||||| |||||||| || | | Sbjct 403275 AATGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGTGCG 403334 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| || || |||| |||| || | |||||| ||| || Sbjct 403335 ATGCCCTCCTTGTCCTGGATCTTGGCTTTC-ACATTCTCAATGGTGTCTGAGCT---CTC 403390 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || ||||| | || || || ||||||||||| Sbjct 403391 AACCTCAAGAGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCAT 403441 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| ||||| |||||||| || | || ||||| | |||||| Sbjct 403461 ACCAGGTGCAGCGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCGTCC 403520 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||| ||||||||||| | || | || ||||| || | Sbjct 403521 AGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGA 403580 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTT 33717 || || ||||| || | |||||| ||| || || |||| ||||| || Sbjct 403581 ATCTTAGCTTTCACGTTATCAATGGTGTCTGAGCT---CTCAACCTCAAGGGTGATTGTC 403637 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || |||||||||||||| Sbjct 403638 TTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 403669 >seq474 Length=218880 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || ||||||||||||| ||| ||||| |||| || | || Sbjct 25099 TGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 25158 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||| ||| |||| | || || ||||| || || Sbjct 25159 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT- 25217 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | ||||||| || ||||| || | ||||| || || || || Sbjct 25218 GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTCCCCGT 25277 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGG 33755 | || || || ||||||||||| ||||| Sbjct 25278 CAGGGTCTTCACGAAGATCTGCAT-GTTGG 25306 >seq1029 Length=71094 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | | ||| |||| ||| || || ||||||||| ||||||||||| | Sbjct 12247 CCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGCT 12306 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||||| || ||||| ||||||||||| | || |||||| | || Sbjct 12307 AGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGGGGT 12366 Query 33643 ACACCTTCTTTGTC 33656 | ||| || ||||| Sbjct 12367 ATACCCTCCTTGTC 12380 >seq1025 Length=71329 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||| || ||||||||||| || | ||| || || |||| || | || Sbjct 8481 ATGGAGGGTGGACTCCTTCTGTATGTTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTG 8422 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||| || || | |||||||| || | || | || || ||||| || || Sbjct 8421 CTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 8362 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | |||| ||| | ||||||| || ||||| |||| ||||| || || || | Sbjct 8361 -GGTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCG 8303 Query 33725 TTAACGTTTTTACAAAGATCTGCATAGT 33752 | | || || || ||||||||||| || Sbjct 8302 TGAGGGTCTTCACGAAGATCTGCATGGT 8275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328382243672640