Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24]
80,317 sequences; 556,480,649 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq617 122 1e-22
seq33 120 4e-22
seq652 109 8e-19
seq210 105 9e-18
seq295 96.9 5e-15
>seq617
Length=160175
Score = 122 bits (134), Expect = 1e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||| | || | ||||| | |||| | || ||||||||||| | ||| ||
Sbjct 53369 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCTCAGCATCGGCACAATGCC 53310
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
|||||| | |||||||| ||| ||||||||| || | || || |||||| || ||
Sbjct 53309 ATTAGAAGTTCCATTTGTCCCACGAATATAACTACCCGTGGCACGTATATTATGAACTGA 53250
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| |||||||| || || || | |||||| |||| |||||||| ||
Sbjct 53249 AACACCAATTCCTCCAGCAGACTTGCTTATAACAGCACATTCCTTCAGAGTGTCATAGAT 53190
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| || ||||||||| ||||| | ||| ||||||||
Sbjct 53189 TCCCTCAATACTATCATCTTTCATGCAGACAAGGAAACAGCT 53148
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || ||||||||||||||||| || || ||||||||||| || ||| | || ||
Sbjct 53040 AGTGCCTGCATTAAATAATGTAGGGGAGGCATGAGTGAACCAGCGTTGAGACATCAAATG 52981
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||||||| | | | || || ||||| || || ||||| | || || | |||||
Sbjct 52980 GTATGTTCTGAGAACAGAATCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAG 52921
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | ||||| ||| | | |||||| || || ||| | || ||
Sbjct 52920 CATGTGTTGCGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAGGATCTCTCAAG 52861
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||| ||||| |||||||| | || ||| || || || ||||| ||
Sbjct 52860 AGTCTTAAAACCAAAATAATCATAATCAAAATCCCTGTCATAAATTAT 52813
>seq33
Length=1606457
Score = 120 bits (132), Expect = 4e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| || ||||| | || | ||||| | |||| | || |||| ||| |||| ||| |||
Sbjct 1148410 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACAATGCCA 1148469
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|||||| | |||||||| ||| |||||||| || |||| |||||||| | ||||
Sbjct 1148470 TTAGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 1148529
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || ||| || | |||||| || || || ||||||||
Sbjct 1148530 ATGCCAATTCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTTAAAGTATCATATATT 1148589
Query 69931 CCCTCTATGCTATCATCTATCATG 69954
||||| |||||||||||| |||||
Sbjct 1148590 CCCTCAATGCTATCATCTTTCATG 1148613
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || | |||||| || ||||| ||||| ||||||||||| | ||| | || ||
Sbjct 1148732 AGTCCCTGAATTAAACAAGGTAGGTGATGCATGAGTGAACCACCGCTGAGACATCAAATG 1148791
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||| || || || || ||||| || || ||||| | || || | |||||
Sbjct 1148792 ATATGTTCTGATTGCAGAGTCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAG 1148851
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| ||||| || | |||||| ||| | | ||| || || || || | || ||
Sbjct 1148852 CATGTGCTGCGGCCTTTCTACTACTTTTCCAGAAACTTTTAAGAGATAGGACCTCTCGAG 1148911
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||||||| ||||| |||| || || |||| || ||||| ||
Sbjct 1148912 AGTTTTAAATCCAAAGTAGTCATAATCGAAATCTCGGTCATAAATTAT 1148959
>seq652
Length=146776
Score = 109 bits (120), Expect = 8e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || ||||||||||| || ||||| || ||||||||||| || ||| | || ||
Sbjct 110168 AGTGCCTGCATTAAATAACGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 110109
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|||||| | | | || || ||||| || || ||||| | || || | |||||
Sbjct 110108 ATATGTTCTGAGAACAGAATCAATATCATCCTTGTGGATTCCAACAGCTACTCTCATCAG 110049
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| ||||| || | |||||| ||| | | ||||| ||||| ||| | || ||
Sbjct 110048 CATGTGCTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAGGAGGTAAGATCTCTCAAG 109989
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||| ||||| |||||||||| || |||||| || || ||||| ||
Sbjct 109988 AGTCTTAAAGCCAAAATAGTCATAATCAAAGTCCCTGTCATAAATTAT 109941
>seq210
Length=498004
Score = 105 bits (116), Expect = 9e-18
Identities = 231/341 (68%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 322129 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 322188
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || |||| |||| || || || || ||||
Sbjct 322189 GCCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCGGAGAAGA 322247
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA-TGT 39793
|||| ||||| || || || || || || || | ||| || || || | | ||
Sbjct 322248 AGATCCCTTCAACAGCGGCGAAGGCCACGAGGCGCTCCGCG-AAAGAGTCCGAGGACTGG 322306
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
|||||| | ||||| | || |||||| || || | || || | ||| |
Sbjct 322307 ATCCACCGGAGCGCCCACTGGGCCTTCTTCGCCACCGCCGGAACCGTCTCGACGGCACGA 322366
Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913
|| || | ||||| ||| ||||| | || | || | || ||| |||||
Sbjct 322367 AAAAGGCGGTCCTTTTCGTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACAAC 322426
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954
|| || ||||||||||| || || ||||| || ||||||||
Sbjct 322427 TCGGAGTGGATGTTTTCGATGGCTATCTGGAAGCCGTAAAA 322467
>seq295
Length=381392
Score = 96.9 bits (106), Expect = 5e-15
Identities = 117/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 144559 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 144618
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || || | |||| || || || || ||||
Sbjct 144619 ACCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAG-AGCAGAAGGAGCCGGAGAAGA 144677
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771
|||| || || || || ||||| ||||| || | |||
Sbjct 144678 AGATCCCCTCAACGGCGGCAAACGCAACTAGACGCTC 144714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686219169323880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |