Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq617 122 1e-22 seq33 120 4e-22 seq652 109 8e-19 seq210 105 9e-18 seq295 96.9 5e-15 >seq617 Length=160175 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | |||| | || ||||||||||| | ||| || Sbjct 53369 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCTCAGCATCGGCACAATGCC 53310 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||||||||| || | || || |||||| || || Sbjct 53309 ATTAGAAGTTCCATTTGTCCCACGAATATAACTACCCGTGGCACGTATATTATGAACTGA 53250 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || || | |||||| |||| |||||||| || Sbjct 53249 AACACCAATTCCTCCAGCAGACTTGCTTATAACAGCACATTCCTTCAGAGTGTCATAGAT 53190 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| ||||| | ||| |||||||| Sbjct 53189 TCCCTCAATACTATCATCTTTCATGCAGACAAGGAAACAGCT 53148 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||||||||||||||| || || ||||||||||| || ||| | || || Sbjct 53040 AGTGCCTGCATTAAATAATGTAGGGGAGGCATGAGTGAACCAGCGTTGAGACATCAAATG 52981 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| | | | || || ||||| || || ||||| | || || | ||||| Sbjct 52980 GTATGTTCTGAGAACAGAATCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAG 52921 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||||| ||| | | |||||| || || ||| | || || Sbjct 52920 CATGTGTTGCGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAGGATCTCTCAAG 52861 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| ||||| |||||||| | || ||| || || || ||||| || Sbjct 52860 AGTCTTAAAACCAAAATAATCATAATCAAAATCCCTGTCATAAATTAT 52813 >seq33 Length=1606457 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | |||| | || |||| ||| |||| ||| ||| Sbjct 1148410 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACAATGCCA 1148469 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||| ||| |||||||| || |||| |||||||| | |||| Sbjct 1148470 TTAGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 1148529 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || || || |||||||| Sbjct 1148530 ATGCCAATTCCTCCAGCAGATTTGCTTATAACAGCACATTCCTTTAAAGTATCATATATT 1148589 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 ||||| |||||||||||| ||||| Sbjct 1148590 CCCTCAATGCTATCATCTTTCATG 1148613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || | |||||| || ||||| ||||| ||||||||||| | ||| | || || Sbjct 1148732 AGTCCCTGAATTAAACAAGGTAGGTGATGCATGAGTGAACCACCGCTGAGACATCAAATG 1148791 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| || || || || ||||| || || ||||| | || || | ||||| Sbjct 1148792 ATATGTTCTGATTGCAGAGTCAATATCATCCTTGTGGATTCCAACAGCAACTCTCATCAG 1148851 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| || | |||||| ||| | | ||| || || || || | || || Sbjct 1148852 CATGTGCTGCGGCCTTTCTACTACTTTTCCAGAAACTTTTAAGAGATAGGACCTCTCGAG 1148911 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||||| ||||| |||| || || |||| || ||||| || Sbjct 1148912 AGTTTTAAATCCAAAGTAGTCATAATCGAAATCTCGGTCATAAATTAT 1148959 >seq652 Length=146776 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||||||||| || ||||| || ||||||||||| || ||| | || || Sbjct 110168 AGTGCCTGCATTAAATAACGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 110109 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||| | | | || || ||||| || || ||||| | || || | ||||| Sbjct 110108 ATATGTTCTGAGAACAGAATCAATATCATCCTTGTGGATTCCAACAGCTACTCTCATCAG 110049 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| || | |||||| ||| | | ||||| ||||| ||| | || || Sbjct 110048 CATGTGCTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAGGAGGTAAGATCTCTCAAG 109989 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||| ||||| |||||||||| || |||||| || || ||||| || Sbjct 109988 AGTCTTAAAGCCAAAATAGTCATAATCAAAGTCCCTGTCATAAATTAT 109941 >seq210 Length=498004 Score = 105 bits (116), Expect = 9e-18 Identities = 231/341 (68%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 322129 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 322188 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || |||| |||| || || || || |||| Sbjct 322189 GCCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCGGAGAAGA 322247 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA-TGT 39793 |||| ||||| || || || || || || || | ||| || || || | | || Sbjct 322248 AGATCCCTTCAACAGCGGCGAAGGCCACGAGGCGCTCCGCG-AAAGAGTCCGAGGACTGG 322306 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||| | ||||| | || |||||| || || | || || | ||| | Sbjct 322307 ATCCACCGGAGCGCCCACTGGGCCTTCTTCGCCACCGCCGGAACCGTCTCGACGGCACGA 322366 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || || | ||||| ||| ||||| | || | || | || ||| ||||| Sbjct 322367 AAAAGGCGGTCCTTTTCGTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACAAC 322426 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || || ||||||||||| || || ||||| || |||||||| Sbjct 322427 TCGGAGTGGATGTTTTCGATGGCTATCTGGAAGCCGTAAAA 322467 >seq295 Length=381392 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 144559 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 144618 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || || | |||| || || || || |||| Sbjct 144619 ACCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATAG-AGCAGAAGGAGCCGGAGAAGA 144677 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 |||| || || || || ||||| ||||| || | ||| Sbjct 144678 AGATCCCCTCAACGGCGGCAAACGCAACTAGACGCTC 144714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686219169323880