Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq129 107 2e-18 seq13 107 2e-18 seq121 98.7 8e-16 seq88 98.7 8e-16 >seq129 Length=753513 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | ||| | |||||||| | ||||| || |||||||| || ||||| | Sbjct 556228 CCACCCCGAAGCCGGAGGACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCC 556287 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | || || ||||||||||| || | ||||| | ||| |||||||| || Sbjct 556288 AGCGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGA 556347 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||| |||| | || | ||||| | | |||||| Sbjct 556348 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTCTCAACT 556407 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| || || || ||||||||||| ||||| Sbjct 556408 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 556454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || ||||||||||| ||| | | |||| | || || || ||||| || Sbjct 556713 GTTGACTCTTTCTGGATATTGTAGTCAGCTAAAG-TGCGACCATCCTCAAGTTGTTTGCC 556771 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || || || || | ||||| ||||| ||| ||| || Sbjct 556772 GGCAAATATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTT 556831 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | |||||||| || || || | ||||| || ||||| Sbjct 556832 AACATTATCAATTGTGTCCGAGCTCTCAACTTCAAGGGTGATGGTCTTGCCTGTGAGAGT 556891 Query 27230 TTTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 556892 CTTAACAAAGATCTGCAT 556909 >seq13 Length=2550137 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||||||||||||||| ||| Sbjct 1356623 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTTTCCG 1356682 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || ||||||| || Sbjct 1356683 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1356742 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | |||||||| || || Sbjct 1356743 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 1356802 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1356803 TTCACGAAGATCTGCAT 1356819 >seq121 Length=770561 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| || | ||| || || ||||| || |||||||| || | |||| | || || Sbjct 403461 ACCAGGTGCAGCGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCGTCC 403520 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || ||||| ||||| || || | ||||||||||| Sbjct 403521 AGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGA 403580 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||||| | | || | ||||||| | ||||| || || || || | ||| Sbjct 403581 ATCTTAGCTTTCACGTTATCAATGGTGTCTGAGCTCTCAACCTCAAGGGTGATTGTCTTG 403640 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||| ||||| Sbjct 403641 CCGGTGAGGGTCTTCACAAAGATCTGCAT 403669 >seq88 Length=981168 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 85032 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 85091 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||||||||| | ||||| || || ||||||| || Sbjct 85092 GCGAAGATGAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 85151 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 85152 ACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 85211 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 85212 TTGACAAAGATCTGCAT 85228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424518447252504