Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq295 136 5e-27 seq210 129 7e-25 seq39 86.0 8e-12 >seq295 Length=381392 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| ||||| |||||||| || Sbjct 144574 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 144633 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || ||||| ||||||||||||||||| || Sbjct 144634 GCGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCGGAGAAGAAGATCCCCTCAACGGC 144693 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || ||||||| |||||||| || ||||| Sbjct 144694 GGCAAACGCAACTAGACGCTCGGCGAAGGA 144723 >seq210 Length=498004 Score = 129 bits (142), Expect = 7e-25 Identities = 189/264 (72%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || ||||| || || |||||||| || Sbjct 322144 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCATGAGGCC 322203 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || ||||| |||||||||||||| || ||| Sbjct 322204 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATCCCTTCAACAGC 322263 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG--CG-GGACTTTGTATCAAACCACTTCAT 130203 ||||| || | ||| ||||| || || ||| || |||| || || |||| | Sbjct 322264 GGCGAAGGCCACGAGGCGCTCCGCGAAAGAGTCCGAGGAC--TGGAT----CCACCGGAG 322317 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||||||| ||||| ||| | | ||| || |||| || || ||| || | Sbjct 322318 CGCCCACTGGGCCTTCTTCGCCACCGCCGGAACCGTCTCGACGGCACGAAAAAGGCGGTC 322377 Query 130264 CTTTTCTGATGGATCTTTGATGTA 130287 |||||| || ||||||||||| Sbjct 322378 CTTTTCGTCAGGGTCTTTGATGTA 322401 >seq39 Length=1554931 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||| |||||||| || ||||| | |||||| || | ||||||||| || Sbjct 271866 TCAAACCCATCCATTTCAGTCAACAGCTGATTAAGGGTTTGCTCTCTCTCATCATTCCCA 271925 Query 14210 GGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGA 14267 | | | | || | | | |||| | || || || ||||| ||||| | || | || Sbjct 271926 --CCTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAGATGA 271983 Query 14268 TACATGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGAC 14325 | || ||| ||| || ||| |||| ||| | ||| || |||| ||||| || Sbjct 271984 TGCAAGGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTAC 272041 Query 14326 ACCCACAAACATCTCCACAAA 14346 ||| ||||||||||| ||||| Sbjct 272042 ACCAACAAACATCTCTACAAA 272062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617814314250520