Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq295 149 7e-31 seq210 136 5e-27 seq9 113 5e-20 seq39 109 6e-19 seq228 84.2 3e-11 >seq295 Length=381392 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| || | || ||||| |||||||| ||||||||||| || ||| Sbjct 144723 TCCTTCGCCGAGCGTCTAGTTGCGTTTGCCGCCGTTGAGGGGATCTTCTTCTCCGGCTCC 144664 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| |||| | |||||||||||||| || |||||||| |||||| |||||||||| Sbjct 144663 TTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAAC 144604 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 144603 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 144574 >seq210 Length=498004 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| | || || || |||||| || ||||||||||| || ||| Sbjct 322293 TCTTTCGCGGAGCGCCTCGTGGCCTTCGCCGCTGTTGAAGGGATCTTCTTCTCCGGCTCC 322234 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | || | ||||||||||||||||| |||||||| || ||| ||||||||| Sbjct 322233 TTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGCCTCACTTTCTCCAAC 322174 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 322173 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 322144 >seq9 Length=2675258 Score = 113 bits (124), Expect = 5e-20 Identities = 218/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| || ||||| || || || ||||| || |||| ||||||||| | | Sbjct 1603269 AAACCATCCATTTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTCCCA--C 1603326 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || |||| ||| ||| | ||||| ||||||||||| || |||||||| |||| Sbjct 1603327 CTCCGAGACCGGCACCGCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 1603386 Query 9732 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || | ||||| | || || || | |||||| || || || || || || Sbjct 1603387 AGGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACCCGAGAAGCTCCAACTCC 1603444 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 || || | |||||| || | | ||||| || || |||||| || | || || Sbjct 1603445 CACGAAGAGCTCCACGAATTCGGAGGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCGCC 1603504 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||| ||||| || |||||||| || || || || ||| | | |||| || Sbjct 1603505 GGCCACGGCCCGGGCAAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCC 1603564 Query 9910 TCGTGGAATCTTGGCGCC 9927 | || ||||||||||| Sbjct 1603565 TTTGGGGATCTTGGCGCC 1603582 >seq39 Length=1554931 Score = 109 bits (120), Expect = 6e-19 Identities = 286/426 (67%), Gaps = 18/426 (4%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9613 ||| ||||| || | ||||| || || || || |||| || || || ||| || || Sbjct 271811 ATCTAGGATGTCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 271868 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||| ||||| || | ||||||||| | | Sbjct 271869 AACCCATCCATTTCAGTCAACAGCTGATTAAGGGTTTGCTCTCTCTCATCATTCCCA--C 271926 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || | | | |||| |||| || |||||||||||||| | |||| ||||| Sbjct 271927 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAGATGATGC 271986 Query 9732 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | ||| ||| || || |||| ||| ||||| || || || || || ||||| Sbjct 271987 AAGGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACC 272044 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | | | ||| |||| || || || ||| | ||||| Sbjct 272045 AACAAACATCTCTACAAACTCAGATCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCAC 272103 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | ||||| || || || | || || || || ||||| ||| || || ||| Sbjct 272104 CAGCAATTGCCTTAGCAAGCAACGTTTTCCCAGTTCCTGGAGGACCGATAAGAAGAACAC 272163 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | ||||| || | || || | ||| | ||||| |||| ||| | || ||||| Sbjct 272164 CCTTTGGAA--TTCGTGCACCTACTGCAGTAAACCTCTCTGGTTTCTTCAAGAACTCCAC 272221 Query 9967 AATTTC 9972 || ||| Sbjct 272222 AACTTC 272227 >seq228 Length=474376 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || || |||||||| || || |||| || || | || | || Sbjct 249522 ATCAAGAATTTCCGGCCGGTTCGTCGCAGCAATTACAATAACTCCACTATCCCCACTGAA 249463 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || || | |||||||| | |||||||| |||||||||||| || | | Sbjct 249462 ACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCGTTCATCATTCCCT--CCT 249405 Query 9676 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | | |||| | | || |||| || ||||||||||| || |||||||| | |||| Sbjct 249404 CCAATTCCAGTTCCTCTCTGTCTTCCGACCGCATCAATCTCGTCGATGAAGACCAGGCAT 249345 Query 9734 GG 9735 || Sbjct 249344 GG 249343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582675228029080