Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq129 118 7e-22 seq464 105 4e-18 seq27 104 1e-17 seq121 96.9 2e-15 seq474 93.3 3e-14 seq1025 87.8 1e-12 seq13 86.0 4e-12 seq88 82.4 5e-11 >seq129 Length=753513 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||| ||||| |||||||||||||||||| || | Sbjct 556228 CCACCCCGAAGCCGGAGGACCAAATGAAGAGTAGACTCCTTTTGAATGTTATAGTCCGCC 556287 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || || || |||||||| ||||| || | | ||| || ||||| || Sbjct 556288 AGCGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCCGGGGGA 556347 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || || || ||| ||||| |||||| || Sbjct 556348 ATGCCCTCCTTGTC-CTGAATCTTAGCCTTCACATTATCAATCGTGTCGGAGCTCTCAAC 556406 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || || || || | || |||||||| ||||||||| Sbjct 556407 TTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 556455 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| || | |||||||||| ||||| || |||||||| |||| Sbjct 556000 CCACCACGAAGACGCAGGACAAGATGGAGAGTGGATTCCTTCTGGATGTTATAGTCTGCC 556059 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | || ||||| || || || ||||| || | | ||| || || || || Sbjct 556060 AGGGTACGCCCATCCTCAAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCAGGAGGG 556119 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||||| | || || || || |||||| ||||||||| Sbjct 556120 ATCCCTTCTTTGTCTTGGATCTTG-GCCTTGACATTATCGATGGTGTCTGAGCTCTCCAC 556178 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || |||||||| |||||||| Sbjct 556179 TTCCAGAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 556226 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG- 34537 ||| ||||| || || | || | || || || ||| || || ||||| ||||| | Sbjct 556455 GCCACCTCTGAGCCGAAGGACAAGGTGAAGCGTTGACTCTTTCTGGATGTTGTAATCAGC 556514 Query 34538 -AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 |||||| || | || ||||||||||| || ||||| || | | ||| |||||||| Sbjct 556515 CAAAGTG--CGGCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 556572 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655 || | |||||||||||| ||| || | || || || ||| ||||| |||||| Sbjct 556573 GGAATGCCCTCCTTGTCT-TGAATCTTAGCCTTCACATTATCAATCGTGTC-GAGCTCTC 556630 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || || || || || | || |||||||| |||||||| Sbjct 556631 AACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 556681 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || || || |||| || | || ||||| ||| || || || || || || | Sbjct 556683 CCACCCCTGAGCCGCAGGACAAGGTGAAGAGTTGACTCTTTCTGGATATTGTAGTCAGCT 556742 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | || ||||||||||| ||||||||||| | | ||| ||||| || | Sbjct 556743 AAAGTG--CGACCATCCTCAAGTTGTTTGCCGGCAAATATGAGCCTCTGCTGGTCAGGGG 556800 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCC 34656 | | |||||||| || ||| ||| | ||||| || ||||||||| |||||| Sbjct 556801 GAATGCCCTCCTTATCCTGGAT-TTTGGCCTTAACATTATCAATTGTGTCCGAGCTCTCA 556859 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || || || || || | || || ||||| |||||||| Sbjct 556860 ACTTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTAACAAAGATCTGCAT 556909 >seq464 Length=225985 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||| ||||||||| ||||||||| ||||||||||| | Sbjct 137822 CCTCCACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTTTGGATGTTATAATCGGCG 137881 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || ||||| || ||||| || || | ||||| |||||||| || Sbjct 137882 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG-GGG 137940 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || |||| || | || ||| | || ||||| |||||| || Sbjct 137941 ATGCCTTCCTTATCCTGGATC-TTGGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGAC 137999 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| ||||| || ||||| | || || || || || |||||| Sbjct 138000 CTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 138048 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| |||||| ||| |||||| ||||| || || || | || || | Sbjct 137603 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGCGAGCGTCCTG 137662 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || | | ||| ||||||||||| | |||||| Sbjct 137663 CCGTCCTCAAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCC 137722 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || || ||| || || ||||||||||| | ||| Sbjct 137723 TTGTCCTGGATC-TTCGCCTTCACATTATCAATGGTATCCGAACTCTCCACTTCGAGGGT 137781 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | || |||||||| || ||||| Sbjct 137782 GATCGTCTTTCCCGTAAGGGTCTTCACAAATATTTGCAT 137820 >seq27 Length=1763170 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| ||| |||||| ||||| |||||||| ||||| | || || || Sbjct 581569 AGGCGGAGCACCAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCCGCCAGGGTGCGG 581510 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| ||||| || |||||||| ||||| || || | |||||| Sbjct 581509 CCATCCTCCAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCC 581450 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || | ||| || || |||||| || || | ||| Sbjct 581449 TTGTC-CTGAATTTTGGCCTTCACATTGTCAATCGTATCCGAGCTCTCGACCTCAAGGGT 581391 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||||| ||||| |||||||| Sbjct 581390 GATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCAT 581352 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| ||||| || || || || || | ||| || || |||| || || || Sbjct 581100 ATGGAGGGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTG 581041 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || |||||||| || | |||||| ||||| || || | |||||||||||| ||| | Sbjct 581040 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT-TGAATCT 580982 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 ||| |||||| | || || || | |||||| || | ||| || || || |||| Sbjct 580981 TTGCCTTAACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGG 580922 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || || || || |||||||| Sbjct 580921 TGAGAGTCTTGACGAAGATCTGCAT 580897 >seq121 Length=770561 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||| | || | |||| ||||||||| |||||| || ||||| ||||||| Sbjct 403214 GCCGCCTCTTAATCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGTATGTTGTAATCTGC 403273 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || || || || || ||||| || | ||||| ||||| || | Sbjct 403274 TAATGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGGTGC 403333 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | ||| || | ||| |||||| |||||| | Sbjct 403334 GATGCCCTCCTTGTCCTGGATC-TTGGCTTTCACATTCTCAATGGTGTCTGAGCTCTCAA 403392 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || || || || || | || || || || ||||||||| Sbjct 403393 CCTCAAGAGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATCTGCATG 403442 >seq474 Length=218880 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| ||||| | || || || |||| || || || Sbjct 25099 TGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 25158 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 25159 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATC-TT 25217 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | |||||| || | ||| || || || || || Sbjct 25218 GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTCCCCGT 25277 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || ||||| || |||||||||||| Sbjct 25278 CAGGGTCTTCACGAAGATCTGCATGTTG 25305 >seq1025 Length=71329 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | || | |||||| ||| |||||| || ||||| || || | Sbjct 8506 CGCCGCCGCGGAGGCGGAGGACGAGATGGAGGGTGGACTCCTTCTGTATGTTGTAGTCAG 8447 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| |||||||| | Sbjct 8446 CGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAG 8387 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || || || || | || ||||| |||| Sbjct 8386 GGATGCCCTCCTTGTCCTGGATC-TTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCC 8328 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || | ||| || || || || || | || ||||| || ||||||||| ||| Sbjct 8327 ACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGGTGA 8273 >seq13 Length=2550137 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| |||||| || ||||| || || | || || || ||||||| || || Sbjct 1356616 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTG 1356675 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||||| || || | ||||| |||||||| || | ||||||||||| |||| | Sbjct 1356676 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATC-T 1356734 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || ||| | || ||||| | ||| || || | ||| || || || || | Sbjct 1356735 TGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCG 1356794 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTG 34710 | | || ||||| || |||||||| ||| Sbjct 1356795 TGAGGGTCTTCACGAAGATCTGCATCTTG 1356823 >seq88 Length=981168 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | || | ||||| ||| |||||| || ||||| || || | Sbjct 85000 CGCCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 85059 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| || ||||||| Sbjct 85060 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCCGGCG 85119 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| ||| Sbjct 85120 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCG 85178 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | ||| || || || ||||| | || || ||||| |||||||| ||| Sbjct 85179 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATCTTG 85232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314421522701861