Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq27 118 9e-22 seq129 111 1e-19 seq121 102 7e-17 seq474 100 2e-16 seq464 89.7 4e-13 >seq27 Length=1763170 Score = 118 bits (130), Expect = 9e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||||||| | || || ||||| ||||| | ||| Sbjct 580897 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCC 580956 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| ||||||||||| || ||||| || || || || Sbjct 580957 GATACCATCGACAACGTTAAGGCAAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 581016 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| | ||| || |||| ||||| Sbjct 581017 CAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAT 581076 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | ||| | || | || | ||||||||||| Sbjct 581077 ATCCAGAAGGAATCCACCCTCCATCTCGTCCT-CGACTCCGGGGTGGCAT 581125 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || ||||| || || || Sbjct 581352 ATGCAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTCGAGAGCTCG 581411 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || || |||||||| ||||| || || || || || || || Sbjct 581412 GATACGATTGACAATGTGAAGGCCAAAATTCAGGACAAGGAGGGTATTCCTCCAGACCAG 581471 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||| || | ||| | | ||||||||| Sbjct 581472 CAGCGTTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATTACAAC 581531 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || || | ||| |||| | || | || |||||| Sbjct 581532 ATTCAGAAGGAATCCACTCTTCATCTGGTGCTCCGCCTCCGTGGTGGC 581579 >seq129 Length=753513 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || |||||| | || ||||| ||||| || || Sbjct 556455 CATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAAGTTGAGAGCTC 556396 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| ||||||| | || || || ||||| ||||| || ||||| || || ||||| Sbjct 556395 CGACACGATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 556336 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || || ||||| |||| || | || | | || || || Sbjct 556335 GCAGAGGCTCATCTTTGCTGGTAAACAGCTGGAGGATGGGCGCACGCTGGCGGACTATAA 556276 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| || | |||||||| | || | |||||||| || Sbjct 556275 CATTCAAAAGGAGTCTACTCTTCATTTGGTCCTCCGGCTTCGGGGTGGGAT 556225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || || || || ||| | || ||||| |||||||| || Sbjct 556226 ATGCAGATATTTGTGAAGACCCTCACTGGGAAGACCATCACTCTGGAAGTGGAGAGCTCA 556167 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||||||||| || || || ||||| Sbjct 556166 GACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCTGATCAG 556107 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | || || | ||| | | || || ||| Sbjct 556106 CAGAGGCTCATTTTTGCTGGGAAGCAGCTTGAGGATGGGCGTACCCTGGCAGACTATAAC 556047 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | ||| | || ||||| | || ||||| Sbjct 556046 ATCCAGAAGGAATCCACTCTCCATCTTGTCCTGCGTCTTCGTGGTGG 556000 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | || || |||||||| || || Sbjct 556909 ATGCAGATCTTTGTTAAGACTCTCACAGGCAAGACCATCACCCTTGAAGTTGAGAGCTCG 556850 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| || || || || ||||| || || || || Sbjct 556849 GACACAATTGATAATGTTAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCAG 556790 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| |||||||||||| | || || || || | | || ||||| Sbjct 556789 CAGAGGCTCATATTTGCCGGCAAACAACTTGAGGATGGTCGCACTTTAGCTGACTACAAT 556730 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || | || |||| | ||||||| || Sbjct 556729 ATCCAGAAAGAGTCAACTCTTCACCTTGTCCTGCGGCTCAGGGGTGGTAT 556680 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || ||||| || || Sbjct 556681 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGAGAGCTC- 556623 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || ||||||||||| || ||||| || || || || Sbjct 556622 GACACGATTGATAATGTGAAGGCTAAGATTCAAGACAAGGAGGGCATTCCCCCGGACCAG 556563 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||||||| | || || | || | | ||||||||| Sbjct 556562 CAGAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACTTTGGCTGATTACAAC 556503 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 556502 ATCCAGAAAGAGTCAAC 556486 >seq121 Length=770561 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| |||||||| ||| |||| || ||| | || ||| | || ||||| Sbjct 403217 CGGCATGCAGATCTTTGTAAAGACTTTGACGGGGAAGACGATCACTTTGGAGGTGGAGAG 403158 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| | || || | ||||| ||| ||||| || || ||||| || | || Sbjct 403157 CTCCGACACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCTCTGTGGA 403098 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC-GATT 27162 ||| |||||| | || | || || || || | ||||| | || || | | |||| Sbjct 403097 TCAGCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGAT-GCACGCACGCTGGCAGATT 403039 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||| ||||| || ||| | || |||| |||| || |||||||||| Sbjct 403038 ACAACATTCAGAAGGAATCCACCCTTCACCTGGTGCTGCGGCTGAGGGGTGGCAT 402984 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||||| || || ||| | |||||| | || ||||| || Sbjct 402986 CATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATTACTTTGGAGGTGGAGAGTTC 402927 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| ||||| ||||| || |||||| | || ||||| Sbjct 402926 TGACACTATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATATCCCCGGATCA 402867 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || |||| || ||| || || | |||||||| Sbjct 402866 GCAGCGCCTCATTTTTGCTGGGAAGCAGCTGGAGGATGGTTGCACTCTTGCAGATTACAA 402807 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || || || ||| | || | || | ||| | || ||||| Sbjct 402806 CATTCAGAAAGAATCCACCCTTCACCTTGTCCTTCGTCTCCGTGGTGG 402759 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||| | || || ||||| || || || Sbjct 403669 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 403610 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||| || ||||| || || ||||| ||||| Sbjct 403609 GACACCATTGATAACGTGAAAGCTAAGATTCAGGATAAAGAGGGGATCCCACCTGATCAG 403550 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || |||| || | ||| | | || |||||| Sbjct 403549 CAGCGCCTGATCTTTGCTGGGAAGCAGCTGGACGATGGCCGCACCCTGGCAGACTACAAC 403490 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || ||||| | || | |||| ||||| Sbjct 403489 ATCCAAAAGGAGTCCACGCTGCACCTGGTTCTCCGCCTCAGGGGCGGCAT 403440 >seq474 Length=218880 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| || ||| |||| || || || ||||| | || Sbjct 25302 CATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACTATCACCCTCGAGGTGGAGTCCTC 25243 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 25242 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 25183 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || || | || ||| | ||| | |||||||||| Sbjct 25182 GCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAA 25123 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || |||||||| || Sbjct 25122 CATCCAGAAGGAGTCTAC 25105 >seq464 Length=225985 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || ||||||||| | || || | || || || || Sbjct 138048 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCTTGGAGGTCGAGAGCTC 137989 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || || || || |||||||| || || || || Sbjct 137988 GGACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCC-CCGGACCA 137930 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| ||| | || ||| | ||| | ||||||| || Sbjct 137929 GCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCGCCGATTATAA 137870 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| ||||||||||| || | || ||||| Sbjct 137869 CATCCAAAAGGAGTCCACTCTCCACCTGGTT 137839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434481758235840