Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq27 105 6e-18 seq474 95.1 1e-14 seq13 93.3 4e-14 seq1025 84.2 2e-11 seq464 84.2 2e-11 >seq27 Length=1763170 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| || || || ||||| || |||||||| || || |||| || ||||| Sbjct 581100 ATGGAGGGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTG 581041 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| || |||||||||||||| | ||| | || ||| |||| | ||| | | Sbjct 581040 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGT-CTTGAATCT 580982 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || | | ||| | | | |||||| |||||||| || | ||||| | || || | Sbjct 580981 TTGCCTTAACGTTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGG 580922 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 | || || || || ||||| ||||||| || Sbjct 580921 TGAGAGTCTTGACGAAGATCTGCATCTGTA 580892 >seq474 Length=218880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || |||||||| || || || |||| || ||||| || || || || Sbjct 25110 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 25169 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 25170 GATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 25228 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | |||||| | || |||||||| || || | Sbjct 25229 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTCTTCCCCGTCAGGGTCTTCA 25288 Query 39272 CAAAGATTTGCATCTT 39287 | ||||| ||||| || Sbjct 25289 CGAAGATCTGCATGTT 25304 >seq13 Length=2550137 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 1356616 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTG 1356675 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || || ||||||||||| | ||| | || ||| |||||| ||| || Sbjct 1356676 TTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1356735 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | ||| || ||||| || || | ||||| | || |||| Sbjct 1356736 GGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCG 1356794 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || || ||||| |||||||| Sbjct 1356795 TGAGGGTCTTCACGAAGATCTGCATCTT 1356822 >seq1025 Length=71329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || ||||| || || || || || || || |||| || ||||| Sbjct 8481 ATGGAGGGTGGACTCCTTCTGTATGTTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTG 8422 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || || ||||||||||| | || | || ||| |||||| ||| || Sbjct 8421 CTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT 8362 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || ||| |||||||| || | |||||| | || ||||| Sbjct 8361 GGTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGT 8302 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 8301 GAGGGTCTTCACGAAGATCTGCAT 8278 >seq464 Length=225985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/244 (69%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||||| | | ||| | |||| || || ||| ||| ||||| || Sbjct 137809 AAATATTTGCATCCCTCCACGAAGGCGGAGAACCAGGTGGAGAGTGGACTCCTTTTGGAT 137868 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||||||||| || || || |||| || || || ||||| || || || || ||||| Sbjct 137869 GTTATAATCGGCGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTG 137928 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTAT 39223 |||||| | ||| | || || || ||| ||| || |||| ||| | | | ||| | Sbjct 137929 CTGGTCCG-GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGT 137986 Query 39224 C---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||| ||| || |||| ||||| | || || || || || || || ||||||| Sbjct 137987 CCGAGCT---CTCGACCTCCAAGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATTT 138043 Query 39281 GCAT 39284 |||| Sbjct 138044 GCAT 138047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429125133517421