Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenix_20dactylifera_20[refseq_20GCF_5F000413155.1_202013-06-24] 80,317 sequences; 556,480,649 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq129 116 2e-21 seq13 109 4e-19 seq27 107 1e-18 seq474 100 2e-16 seq121 98.7 7e-16 seq1029 96.9 2e-15 seq1025 89.7 3e-13 >seq129 Length=753513 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| || |||||||| | || Sbjct 556909 ATGCAGATCTTTGTTAAGACTCTCACAGGCAAGACCATCACCCTTGAAGTTGAGAGCTCG 556850 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | |||| | || || || || | || || || || Sbjct 556849 GACACAATTGATAATGTTAAGGCCAAAA-TCCAGGATAAGGAGGGCATTCCCCCTGACCA 556791 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | |||||||||||||||||||| || || | |||||||||| || ||||| Sbjct 556790 GCAGAGGCTCATATTTGCCGGCAAACAACTTGAGGATGGTCGCACTTTAGCTGACTACAA 556731 Query 23790 CATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 556730 TATCCAGAAAGAGTCAAC 556713 Score = 98.7 bits (108), Expect = 7e-16 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || |||||||| | || Sbjct 556681 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGAGAGCTCG 556622 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| |||| ||| | || | || | || ||||| || || | || || || || Sbjct 556621 -ACACGATTGATAATGTGAAGGCTAAGA-TTCAAGACAAGGAGGGCATTCCCCCGGACCA 556564 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||||||||| || || | |||||||| | |||||||| Sbjct 556563 GCAGAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGCCGCACTTTGGCTGATTACAA 556504 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 556503 CATCCAGAAAGAGTCAAC 556486 >seq13 Length=2550137 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || || ||||| ||||| || || ||| Sbjct 1356822 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 1356763 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || || | || || || Sbjct 1356762 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGAC 1356703 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| ||||| || ||||||| ||||| | | ||| ||| Sbjct 1356702 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCCTCGCCGACTAC 1356643 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 1356642 AACATCCAGAAGGAGTCCAC 1356623 >seq27 Length=1763170 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || || || | || Sbjct 581352 ATGCAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTCGAGAGCTCG 581411 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||||| ||||| || ||| | || ||||| || Sbjct 581412 GATACGATTGACAATGTGAAGGC-CAAAATTCAGGACAAGGAGGGTATTCCTCCAGACCA 581470 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || || || ||||| || | ||||| | | |||||||| Sbjct 581471 GCAGCGTTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATTACAA 581530 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 581531 CATTCAGAAGGAATCCAC 581548 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || || ||||| || || || || ||| | Sbjct 580897 ATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCC 580956 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| |||| | || ||||| || || | || ||||| || Sbjct 580957 GATACCATCGACAACGTTAAGGCAAAGA-TTCAAGACAAGGAGGGCATCCCCCCAGACCA 581015 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || |||| ||||| | | ||| ||||| Sbjct 581016 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAA 581075 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 581076 TATCCAGAAGGAATCCAC 581093 >seq474 Length=218880 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || ||||| ||||| || || ||| Sbjct 25304 AACATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACTATCACCCTCGAGGTGGAGTCC 25245 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | |||||||| Sbjct 25244 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGAC 25185 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||| || || || || |||| ||||| | | ||||||| Sbjct 25184 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTAC 25125 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 25124 AACATCCAGAAGGAGTCTAC 25105 >seq121 Length=770561 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || ||||| | | Sbjct 403441 ATGCAGATCTTCGTCAAGACCCTTACAGGGAAGACCATCACTCTTGAGGTTGAGAGCTCA 403382 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | | ||||| || || | | || || || Sbjct 403381 GACACCATTGAGAATGTGAAAGCCAAGA-TCCAGGACAAGGAGGGCATCGCACCTGACCA 403323 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| |||| |||||||| Sbjct 403322 GCAGCGCCTGATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACATTAGCAGATTACAA 403263 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || |||||||| Sbjct 403262 CATACAGAAGGAGTCCAC 403245 >seq1029 Length=71094 Score = 96.9 bits (106), Expect = 2e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| |||| ||||||||||| | || || ||||| || || || ||||| Sbjct 12380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 12321 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || ||| ||||||||||| ||||||||||| ||| | ||| | |||||| Sbjct 12320 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 12261 Query 23824 AGG 23826 ||| Sbjct 12260 AGG 12258 >seq1025 Length=71329 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || || | Sbjct 8278 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 8337 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || || || || ||||| || || | || || || || Sbjct 8338 GACACCATCGACAATGTCAAGAC-CAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 8396 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || ||||| || || || || |||| || || | | || ||||| Sbjct 8397 GCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTCGCTGACTACAA 8456 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| || |||||||| Sbjct 8457 CATACAGAAGGAGTCCAC 8474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337678734761036