Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq542047 82.4 8e-11 >seq542047 Length=2783 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| ||| |||||| |||||||| |||||||| ||||| ||||| Sbjct 1482 ATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGG 1423 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAG 17352 || ||||| ||| | ||| || || | || || || || | ||| | || || Sbjct 1422 AAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT-GAACCTGGAGGCGAG 1364 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||| ||||||||||||| |||||||| || || Sbjct 1363 GTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGC 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507313031270760