Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq542047 82.4 8e-11 >seq542047 Length=2783 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || ||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 1752 AGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 1693 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || ||||| | |||||| || ||| || || ||||| ||| Sbjct 1692 AGGCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAG 1633 Query 16319 AATATACCCTCAACAGATGCAAAAGCGA 16346 || || |||||||| | || || |||| Sbjct 1632 AAGATGCCCTCAACGCAGGCGAAGGCGA 1605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501303053295240