Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07]
1,581,707 sequences; 1,684,931,674 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq122391 84.2 2e-11
seq46261 82.4 6e-11
>seq122391
Length=5611
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
|| ||||| || ||||||||||| || ||||||||||||||| | || |||| |||
Sbjct 2826 GACCAACAGAGGCTTATCTTTGCTGGAAAACAACTGGAAGATGGCCGCACCTTGGCTGAT 2885
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
||||| ||||||||||| || || || ||| | || | || || |||| |||
Sbjct 2886 TACAACATTCAGAAGGAGTCCACCCTCCACCTTGTTCTTCGGTTGAGAGGTGGG 2939
>seq46261
Length=4898
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || |||| || ||||| ||||| ||||| ||| || |||| || ||
Sbjct 459 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCCTCA 400
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | | | ||| || || || || || || | ||| || ||
Sbjct 399 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 340
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|| | || |||||||| || || || || || ||| | ||| |||| ||||||||
Sbjct 339 CAGCGCCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGCCGCACTCTGGCAGATTACAAC 280
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171
||||||||||| |||||||| ||| |||||
Sbjct 279 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420078943771085
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |