Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq122391 98.7 1e-15 >seq122391 Length=5611 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||||||||| || || || || || | ||| |||| ||| Sbjct 3168 ATGCAGATCTTTGTAAAGACACTAACTGGGAAGACCATTACACTTGAGGTTGAGAGC-TC 3226 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || || || || || || || ||||| || ||||| || Sbjct 3227 CGACACCATTGATAATATTAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCA 3286 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | |||||| | || ||||| | ||||| || Sbjct 3287 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGGCGCACATTGGCCGATTACAA 3346 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | || | ||| | || | |||||||||| Sbjct 3347 CATCCAAAAGGAGTCCACCCTCCACCTTGTTCTTCGCCTGAGAGGTGGTAT 3397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740519624457600