Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq41339 98.7 7e-16 seq1486945 86.0 5e-12 >seq41339 Length=11645 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || || ||||||||||| ||| Sbjct 3097 CCACCACGGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 3156 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || || || ||| ||||||| | || || ||| ||| Sbjct 3157 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCCGGGGGG 3216 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | |||||| | ||| |||||| || |||| Sbjct 3217 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACC 3276 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| |||| ||| || |||||||| ||||| Sbjct 3277 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAAATCTGCAT 3323 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || || || || || ||||||||||| ||| Sbjct 3325 CCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 3384 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || ||||| || |||| || | || || ||| || Sbjct 3385 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 3444 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | |||||| | | | |||||| || |||| Sbjct 3445 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCGATAGTGTCCGAGGACTCGACC 3504 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||||| ||| || |||||||| ||||| Sbjct 3505 TCCAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAAATCTGCAT 3551 >seq1486945 Length=5508 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || || | |||||| || || || || || ||||||||||| || Sbjct 3443 CCTCCACGAAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCA 3384 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | ||| ||||| ||| |||| || | || || ||| ||| Sbjct 3383 AGGGTGCGACCATCCTCAAGTTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 3324 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | ||| || | ||| ||||| || |||| Sbjct 3323 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCCGAGGACTCGACC 3264 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | |||||||| | || || ||||| || ||||| Sbjct 3263 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 372031365203715