Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq542047 96.9 5e-15 seq4015 95.1 2e-14 >seq542047 Length=2783 Score = 96.9 bits (106), Expect = 5e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 1749 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 1690 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || ||||| || |||| | || || || || || ||||| Sbjct 1689 CCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGG-CACAGAAGGAGCCCGAGAAGAA 1631 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAAC 50105 ||| || || || ||| ||||| || Sbjct 1630 GATGCCCTCAACGCAGGCGAAGGCGAC 1604 >seq4015 Length=6327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||||| || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 1489 TCCGCCTTGATCTACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 1430 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || || || ||||| |||||||| ||| | |||||||| || || || Sbjct 1429 ATTGGACGTCCCGTTTGTCCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGA 1370 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| || | || || || | ||||||||||| Sbjct 1369 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAGAT 1310 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | || |||||||| Sbjct 1309 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704067665139480