Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq542047 150 3e-31 >seq542047 Length=2783 Score = 150 bits (166), Expect = 3e-31 Identities = 576/889 (65%), Gaps = 34/889 (4%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 1170 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 1229 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | ||||| || || | Sbjct 1230 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCCCGCCACTGGGACACGACGCT-- 1287 Query 125112 ACTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 || ||| ||||| | || || || ||| | | |||||||| |||| |||||| | Sbjct 1288 -CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACG 1346 Query 125170 GAATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| ||| || || | | ||| | || || || | | |||| Sbjct 1347 GCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCC 1405 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| Sbjct 1406 AGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTG 1465 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAAT 125344 || || || | ||||| ||||| | |||| || || ||||| ||| || Sbjct 1466 CTCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCAT 1521 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 |||||| | || | | || ||||| | |||| |||| |||||||| | || Sbjct 1522 CGACACCATCCCAGCCGTGCGCCGCAAGGCCGACTGGGCCCTTCGCTGGATCGACGGCGG 1581 Query 125405 CAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 || ||||| |||| | | || || |||||| ||| |||||||||||||| | Sbjct 1582 GGAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCT 1637 Query 125464 CGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| | || || |||||||| |||||||||||||| || |||||||| || || || Sbjct 1638 CGGGCTCCTTCTG-TGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACC 1696 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 1697 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTC 1756 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGC-AGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 | | || ||||| || || || || | ||| ||| || | || || Sbjct 1757 T---ACGACATCCTGCG---CG---GCAAGCTCGA-CGAGTCCCGCGTCTTCGAGATCGT 1806 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 | || |||||| ||||| |||||| | || | || || | | | Sbjct 1807 CTCTGAGGCCGTGGACATAGAGAGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGCTCGT 1866 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 ||||||||| || | || ||| || ||||||| ||||| || || || || || || Sbjct 1867 CGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCAT 1926 Query 125762 CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | | || || |||| | |||||||||| || || || || | ||| ||| Sbjct 1927 GGCGCTGGGCTGCAACAAGCTCTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCAT 1986 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 1987 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 2035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726407468449320