Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq122391 86.0 4e-12 >seq122391 Length=5611 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 15131 TGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAA 15190 ||| | ||||||||||| | | ||| | || |||||||| || || || ||||||||| Sbjct 2944 TGTATCCCACCTCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAA 2885 Query 15191 TC-GCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTC 15249 || || || | | | ||||| | |||||| ||||| | || | | |||||||| Sbjct 2884 TCAGCCAAG-GTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTC 2826 Query 15250 GTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATT 15309 ||||| || || ||||| ||| ||| || ||| | || |||||||| | | Sbjct 2825 CGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACT 2766 Query 15310 TTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | || || || || || || || || || |||||||| ||||| Sbjct 2765 CTCAACCTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355197451981287