Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq46261 95.1 1e-14 seq41339 86.0 5e-12 seq1545881 82.4 6e-11 seq122391 82.4 6e-11 >seq46261 Length=4898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| |||||||| |||| || | | ||||| Sbjct 250 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCCAGAGTGCGGCCATCCTC 309 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 310 GAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 369 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || | ||| || | ||| ||||| || Sbjct 370 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGGATTCCACCTCCAGGGTGATGGTCTT 429 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || ||||| Sbjct 430 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 459 >seq41339 Length=11645 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||||| ||| | || |||||||| || || ||||| |||||| Sbjct 3097 CCACCACGGAGCCTGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 3156 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| ||||| ||| | ||||| | |||||| ||| ||| Sbjct 3157 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCCGGGGGG 3216 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| || || || ||| || || | | | | || || | ||| Sbjct 3217 ATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACC 3276 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || ||||||||||| ||||| Sbjct 3277 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAAATCTGCAT 3323 >seq1545881 Length=1019 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| ||||||| || | | ||||| Sbjct 704 CACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCATCCTC 645 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| || | ||||| ||||| Sbjct 644 GAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTG 585 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || ||| | ||| || | ||| ||||| || Sbjct 584 GATCTTCGCCTTCACGTTGTCGATGGTGTCGGACGACTCAACCTCCAGGGTGATGGTCTT 525 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||||||||| ||||| Sbjct 524 GCCGGTGAGCGTCTTGACAAAAATCTGCAT 495 >seq122391 Length=5611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18809 TGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAA 18868 ||| | || |||| ||||| | || | ||| | || |||||||| ||||| |||||| Sbjct 2944 TGTATCCCACCTCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAA 2885 Query 18869 TCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 || |||| || | | || ||||| ||||| || ||| | ||||| ||||| || ||| Sbjct 2884 TCAGCCAAGGTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCC 2825 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 || | |||||| ||||| ||| || ||| || | | | | ||||| | | Sbjct 2824 GGAGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTC 2765 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || || | || ||||||||||| ||||| Sbjct 2764 TCAACCTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406581057721558