Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq122391 159 8e-34 seq529058 109 1e-18 seq138816 105 2e-17 seq105165 102 2e-16 seq1492279 95.1 3e-14 seq8108 89.7 1e-12 seq559781 87.8 4e-12 >seq122391 Length=5611 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104329 TATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 ||| || ||||| | || ||| || || || | || || || |||||||| || || || Sbjct 2942 TATCCCACCTCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATC 2883 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || | || | || ||||| ||||||||||||||||| || ||||||||||| || || Sbjct 2882 AGCCAAGGTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGG 2823 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| || || || || ||||||||||| ||||| ||||| || | |||||| | || Sbjct 2822 AGGAATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTC 2763 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| || || || || || ||||| |||||||| Sbjct 2762 AACCTCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 2712 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||||||||| || ||||| || | | || | || || Sbjct 3607 AGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCTGCCAAGGTACGCCCATCC 3548 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || |||||||| ||||| || || |||||||| || ||| Sbjct 3547 TCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC 3488 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || ||||| || || || || || | ||| ||| || | || ||||| || || || || Sbjct 3487 TGGATCTTAGCCTTCACGTTATCGATGGTGTCG-GAGCTCTCCACCTCAAGAGTGATGGT 3429 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || ||||| |||||||| Sbjct 3428 CTTCCCAGTTAGCGTCTTAACAAAGATCTGCAT 3396 >seq529058 Length=7459 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || || || ||||| || || ||||||| || || | Sbjct 882 AGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGG 823 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || ||||| || || || | ||| || || ||||| || || || Sbjct 822 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 763 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGT 104520 || ||||||||||| || || || || || | ||| || | ||| || ||||| || || Sbjct 762 TTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTC-CGAGGACTCGACCTCAAGGGT 704 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || ||||| |||||||| Sbjct 703 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 665 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | | || | || || || || || || || Sbjct 1317 GTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCG 1258 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 1257 GCAAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTC 1198 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 1197 ACGTTGTCAATTGTGTC-CGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGT 1139 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1138 CTTCACGAAAATCTGCAT 1121 >seq138816 Length=1792 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | ||| || || ||||| || || ||||||| || || | Sbjct 1530 AGCCTGAGGACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGG 1589 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || || || || || || | ||| || || || || || || || Sbjct 1590 CCATCCTCGAGCTGCTTACCCGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 1649 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| || || ||||| || | ||| || | || ||||| || || Sbjct 1650 TTGTCCTGGATCTTGGCCTTCACATTATCGATGGTGTCAGATGACTCCACCTCCAGGGTG 1709 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||||||||| Sbjct 1710 ATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 1747 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | || || | || || || || || || || Sbjct 1323 GTGGATTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 1382 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 1383 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1442 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | ||| || ||||| || || || ||||| || || || || Sbjct 1443 ACATTGTCAATGGTGTC-CGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 1501 Query 104542 TTTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 1502 CTTGACAAATATCTGCAT 1519 >seq105165 Length=13307 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 12840 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAG 12899 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || ||||| | || |||||||||||||||||||| || ||||| || | Sbjct 12900 CTAATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGG 12959 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 12960 GAATGCCCTCCTTGTCCTGAA 12980 >seq1492279 Length=5800 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 104329 TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 || |||| || || ||||| || || | ||| | || || ||||||||||| || || | Sbjct 3469 TAGTCCCACCCCTCAGCCTCAGGACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAAT 3528 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 ||| || || | || ||||| || || |||||||||||||||||||| || || || | Sbjct 3529 CAGCTAATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTG 3588 Query 104448 GAGGTATTCCTTCTTTATCCTG 104469 | || || ||||| || ||||| Sbjct 3589 GTGGGATGCCTTCCTTGTCCTG 3610 >seq8108 Length=1851 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 104374 CTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAG 104433 |||||| || || |||| ||| | | | | || || ||||| || || || || || || Sbjct 572 CTGAATGTTGTAATCAGTCAGA-TGCGAGCATCCTCGAGTTGCTTGCCGGCGAAGATCAG 630 Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 | ||| || || || || || || || |||||||| ||| | || || ||||| || Sbjct 631 GCGCTGCTGGTCCGGGGGGATACCCTCCTTATCCTGGATCCTGGCCTTAACATTGTCGTT 690 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 ||| || || || |||||||| ||||| | || ||||| | || || |||||||| Sbjct 691 GGTGTCAGAAGACTCAACCTCTAGGGTAATGATTTTGCCAGTCAAGGTCTTCACAAATAT 750 Query 104554 CTGCAT 104559 |||||| Sbjct 751 CTGCAT 756 >seq559781 Length=2113 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 725 GTCGACTCCTTCTGGATGTTGTAGTCTGCCAGCGTGCGGCCGTCCTCCAGCTGCTTCCCG 784 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||| ||| || || || || || || || || ||||| ||||| || || Sbjct 785 GCGAAGATAAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTC 844 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| || | ||| || Sbjct 845 ACGTTGTCGATCGTGTCCGACGACTCCACCTCCAGCGTGATCGTCTTCCCCGAAAGCGTC 904 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || ||||||||||| ||| Sbjct 905 TTCACGAATATCTGCATCTTG 925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1128064596477556