Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq7684 125 6e-24 seq1488256 116 3e-21 seq67785 91.5 1e-13 seq190687 86.0 5e-12 seq636849 82.4 6e-11 >seq7684 Length=1440 Score = 125 bits (138), Expect = 6e-24 Identities = 178/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| | | || |||| ||| ||||||| Sbjct 767 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCGGACGGTGGCGTCGAGGTCGTCCACCTCG 826 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| | |||| || ||||||||| | ||||| || | | Sbjct 827 GCGACGTCCGG---CGTGGCGATCCTCTCGACGACCAGCTGCGCGACGCGGTCCCCGGGC 883 Query 5618 TTTACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 || || |||| ||| | | |||| |||||| || || ||||| ||| ||| |||| Sbjct 884 TTGACGGCGAAGTCG--GCGTCCGAGTGGTTGAAGAGGACGACGCCGACGGGGCCCCGGT 941 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| ||||||| |||||| || || | Sbjct 942 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGACC 1001 Query 5736 GGGGAGC 5742 | || || Sbjct 1002 GCGGCGC 1008 >seq1488256 Length=7167 Score = 116 bits (128), Expect = 3e-21 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| | || | | || |||| ||| | ||||||| Sbjct 5373 ACGCCGGTGGACCCGAACCCGCCCTCCCCGCGGACGGTGGCGTCGAGGTCCTCCACCTCG 5314 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || || | | | || | ||||| ||| || | |||||||| | ||| Sbjct 5313 GCGACCTCCGGCGTGGCGATCAC-CTGGATGATCATCTGGGCCACGCGGTCGCCGGGCTT 5255 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || | || || | |||| |||||| ||||| |||||||| |||||||||| Sbjct 5254 CACGGCAAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGACGCCCACCGGGCCGCGGTAG 5197 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||| || ||||||||||||||| |||||| | ||||||||| || Sbjct 5196 TCGGCGTCGATCACCCCGGCGCCCACGTCGATGGCGTGCTTCAGCGCCAGGCCCGA 5141 >seq67785 Length=6470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 5590 GATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGT---T 5646 || ||||||||| | | ||| | | ||| || |||| |||| |||| ||| | Sbjct 239 GACCAGCTGCGCCACGCAGTCCCTGGGCTTCACGGCGAA---GTTGACGCCGGAGTGGTT 295 Query 5647 GAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTC 5706 ||| || | ||||| ||| |||| |||||||||||||| | |||||||||||||||||| Sbjct 296 GAAGAGGATGACGCCGACGGTGCCCCGGTAGTCGGCGTCCACCACGCCCGCGCCCACGTC 355 Query 5707 GATGAAGTGCTT 5718 |||| ||| ||| Sbjct 356 GATGGAGTACTT 367 >seq190687 Length=1087 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/242 (68%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 || ||||| ||||| ||||| ||| || | || | || ||| ||||||| | Sbjct 599 CCGGTGGATCCGAAGCCGCCCTCGCTCCTCACGGTGGCATCGAGGTCGTCCACCTCGGCG 658 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 || ||||| || | | ||| || ||||| ||| | | ||| | | ||| || Sbjct 659 ACGTCGGGCGTGGCGACCCTATCGATGACCAGCTACGCCACGCAGTCCCTGGGCTTCACG 718 Query 5624 TCGAAATCGTTGTGGCCGAAGT---TGAACAGCACCACGCCCACGTTGCCGCGGTAGTCG 5680 |||| |||| |||| ||| |||| || | ||||| ||| |||| ||| ||||| Sbjct 719 ACGAA---GTTGACGCCGGAGTGGTTGAAGAGGATGACGCCGACGGTGCCCCGGCAGTCG 775 Query 5681 GCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGA 5740 ||||| | |||||||||||||||||||| ||| ||| |||||| || || || || Sbjct 776 GCGTCCACCACGCCCGCGCCCACGTCGAATGAGTACTTCCACGCCAGCCCCGACCGTGGC 835 Query 5741 GC 5742 || Sbjct 836 GC 837 >seq636849 Length=2565 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCC-ACCTC 5559 ||| | ||||| ||||| ||||| | || || | || | || ||| |||| ||||| Sbjct 1092 ACGTCGGTGGATCCGAAGCCGCCCTCTCCCCTCACGGTGGCATCAAGGT-CGCCTACCTC 1034 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | |||||| || | | ||| || ||||||||| | | ||| | | ||| Sbjct 1033 GGCGATATCGGGAGTGGCGACCCTATCGATGACCAGCTGCGCCACGCAGTCCCTGGGCTT 974 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGT---TGAACAGCACCACGCCCACGTTGCCGCGGTA 5676 || |||| ||| ||||||| |||| || | |||| ||| |||| ||||| Sbjct 973 CACAGCGAAGTCGACA---CCGAAGTGGTTGAAGAGGATGACGCGGACGGTGCCCCGGTA 917 Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCT 5717 ||||||||| | ||||||||||||||| |||||| ||| || Sbjct 916 GTCGGCGTCCACCACGCCCGCGCCCACATCGATGGAGTACT 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421764218081384