Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq104936 132 7e-27 seq1490411 129 9e-26 seq1490023 120 5e-23 seq41824 114 2e-21 seq48464 111 2e-20 seq137947 109 9e-20 seq576642 105 1e-18 seq638911 104 4e-18 seq609655 100 4e-17 seq566986 96.9 5e-16 seq1491950 95.1 2e-15 seq44655 89.7 8e-14 seq685946 84.2 3e-12 seq362652 82.4 1e-11 seq659693 80.6 4e-11 >seq104936 Length=3345 Score = 132 bits (146), Expect = 7e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || ||||| || ||||| || | || Sbjct 2439 TCTGCGGGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGCGGCTGGCGCGGAGGGG 2498 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| |||| || | |||| || |||| || | || | |||||||| Sbjct 2499 CGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTT 2558 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 2559 CCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGT 2618 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| |||| || || | || || || ||||||| | ||||| || || Sbjct 2619 CACCGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGGGCCGTACCCTGTATGGCTTCGG 2678 Query 16693 AAGTTA 16698 |||| Sbjct 2679 CGGTTA 2684 >seq1490411 Length=4429 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||||||||||| || || || Sbjct 2677 CTGCGGGACAACATCCAGGGGATCACCAAGCCGGCGATCCGTCGTCTGGCCCGGCGGGGC 2618 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 2617 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGGGGCGTGCTCAAGATCTTC 2558 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 2557 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 2498 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || || || Sbjct 2497 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACG 2457 >seq1490023 Length=2181 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 712 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGGCTGGCGCGGCGGGGC 771 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 772 GGCGTGAAGCGCATCTCGGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 831 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||||| | ||| || |||||||| || ||||| ||| Sbjct 832 CTCGAGAACGTCATCCGCGATGCCGTTACCTACACGGAGCACGCCCGCCGAAAGACCGTC 891 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || ||||| | | || || ||||| Sbjct 892 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTTGG 950 >seq41824 Length=6128 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 3672 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 3613 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 3612 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 3553 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 3552 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 3493 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || || || Sbjct 3492 ACCGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGTCG 3452 >seq48464 Length=2434 Score = 111 bits (122), Expect = 2e-20 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||| Sbjct 2265 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTTGCTCGCCGTGGC 2324 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 2325 GGGGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 2384 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || || ||| ||||||||||| Sbjct 2385 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGC 2428 >seq137947 Length=1025 Score = 109 bits (120), Expect = 9e-20 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || || || || |||||||| || ||||||||||| || | Sbjct 864 CGCCAAGCGTCACCGGAAGGTC-CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGA 922 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| |||||||| || || ||||| |||| || | |||| || |||| Sbjct 923 TCCGCCGTCTGGCGCGTCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 982 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 983 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 1021 >seq576642 Length=3043 Score = 105 bits (116), Expect = 1e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 2852 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 2911 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2912 CCGGCGCCTGGCGCGGCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2971 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 2972 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 3031 Query 16612 GCACGC 16617 |||||| Sbjct 3032 GCACGC 3037 >seq638911 Length=731 Score = 104 bits (114), Expect = 4e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| || || | || Sbjct 550 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGTCTCGCGCGCAGGGGC 609 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 610 GGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 669 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 670 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 729 Query 16634 AC 16635 || Sbjct 730 AC 731 >seq609655 Length=1482 Score = 100 bits (110), Expect = 4e-17 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 177 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 119 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || ||||| || || || ||||| |||| || | |||| || |||| Sbjct 118 TCCGTCGTCTCGCGCGTCGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 59 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 58 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 20 >seq566986 Length=3923 Score = 96.9 bits (106), Expect = 5e-16 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | ||| || || |||||||| || || |||||||| || || Sbjct 3759 CGCCAAGCGCCACCGGAAGGTTCTGCGGGACAACATCCAGGGCATAACCAAGCCGGCGAT 3818 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 3819 CCGGCGGCTGGCTCGCCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 3878 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 3879 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 3916 >seq1491950 Length=4377 Score = 95.1 bits (104), Expect = 2e-15 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | |||| || || || |||||||| || ||||||||||| || | Sbjct 596 CGCCAAGCGCCACCGGAAGATC-CTCCGCGACAACATCCACGGCATCACCAAGCCGGCGA 654 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | || || || ||||| |||| || | ||||| | || | Sbjct 655 TCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGCGTCGTCTACGGGGAAA 714 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | | ||||||||| || || |||| || | || ||| ||| Sbjct 715 CCCGCGGCGTCCTCCATATCTTCCTCGAGGAAGTCATCCGCGACGTCGTCGCCTACACCC 774 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 775 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 834 Query 16671 GCCG 16674 |||| Sbjct 835 GCCG 838 >seq44655 Length=7046 Score = 89.7 bits (98), Expect = 8e-14 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || || ||||| || |||||||||| || ||||| || |||| | |||| || || Sbjct 3408 GACAAAATCCAGGGCATCACCAAGCTGGCCATCCGGCGCTTGGCAAGGAGTGGCGGCGTG 3467 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | | | | ||||||| |||| | | | | |||||||||||| || Sbjct 3468 AAGCGCATATTGAGGCTCATCTATGAGGAGACCCACAACATGCTCAAGATCTTCCTCGAG 3527 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || | || ||| |||||||||| | |||||| |||||| || Sbjct 3528 AACGTCATCCGCGACTCCATCACCTACACCGAGCACGTCTGTCTTAAGACCGTCACCGCC 3587 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||||| ||||||| || | || || || ||||| | | || ||||| ||| Sbjct 3588 ATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTGGGA 3641 >seq685946 Length=367 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | | |||| || | || Sbjct 192 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCATTTGGCCCGCAGGGGC 251 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 | || ||||| | || || | |||| || |||| || | || | ||||||||| Sbjct 252 GACGTGAAGCGCATTTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 311 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || || ||| ||||||||||| Sbjct 312 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGC 355 >seq362652 Length=1243 Score = 82.4 bits (90), Expect = 1e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 16565 AAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT 16624 |||||||||||| ||| ||| |||| || || || ||| ||||||||||| || Sbjct 1240 AAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGC 1181 Query 16625 AAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| |||||| ||||||| ||||||| ||| | || || || ||||| Sbjct 1180 AAGACCGTCACCGCCATGGACGTCGTCTACGCACTCAAGCGCCAGGGCCG 1131 >seq659693 Length=927 Score = 80.6 bits (88), Expect = 4e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| | || Sbjct 800 CTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCATCCGGCGCCTGGCTCGGAGGGGC 859 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 860 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 919 Query 16574 CTCAAGA 16580 ||| ||| Sbjct 920 CTCGAGA 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 77629034217951