Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq68655 190 3e-43 seq539347 145 9e-30 seq507140 136 5e-27 seq466961 113 6e-20 seq216476 113 6e-20 seq214663 113 6e-20 seq680530 107 2e-18 seq428484 105 8e-18 seq40677 104 3e-17 seq37697 89.7 6e-13 seq182135 87.8 2e-12 seq1484923 82.4 9e-11 seq398894 82.4 9e-11 >seq68655 Length=5599 Score = 190 bits (210), Expect = 3e-43 Identities = 196/255 (77%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTAC 135766 ||||| ||||||||||| || || |||||||||| ||||||||| ||| || || Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 135767 TCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAG---GT 135823 ||||| | |||||| ||| |||||||| ||||| || | ||||| |||| ||| | Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 135824 TCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTC 135883 | ||| |||||||||||| | || || ||||| ||||| ||| ||| |||| ||| Sbjct 842 TTTTT---TGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTC 898 Query 135884 CAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTC 135943 |||||||| |||||||| || |||||||| ||||||||||| || | ||||| || ||| Sbjct 899 CAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTC 958 Query 135944 GGTGGTTCTCTGTTC 135958 || ||||| || ||| Sbjct 959 GGCGGTTCCCTATTC 973 >seq539347 Length=3493 Score = 145 bits (160), Expect = 9e-30 Identities = 129/160 (81%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 135832 TGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGA 135891 |||||||||||| | || || ||||| ||||| |||| ||| |||| ||||||||||| Sbjct 3 TGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 62 Query 135892 ACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTC 135951 |||||||| || |||||||| ||||||||||| || || ||| | || ||||| |||| Sbjct 63 GCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGTTT 121 Query 135952 TCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGT 135991 || ||| ||||||||||||| || | || ||||||||| Sbjct 122 CCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGT 161 >seq507140 Length=321 Score = 136 bits (150), Expect = 5e-27 Identities = 182/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 138288 GTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTG 138347 || ||||| || ||||| ||| ||||| ||||||||||||| || ||||| || Sbjct 67 GTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 126 Query 138348 GCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCC 138407 ||| | || || |||||| | | ||| | || || || ||||| ||||| | ||||| Sbjct 127 GCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCA 186 Query 138408 TTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGT 138467 |||||||||||||| || || | | | |||| |||||||| || ||||||||||| Sbjct 187 TTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGA 246 Query 138468 GCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTT 138527 || || |||||||| ||| | | ||| || || || ||||||| || || ||| Sbjct 247 GCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCTGTGCTTTT 306 Query 138528 GAACCTACTCAAG 138540 | || ||||||| Sbjct 307 AACCCAACTCAAG 319 >seq466961 Length=778 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 138741 GAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGT 138800 |||||||||||||| ||||| ||||| ||||| || |||||| | || || ||| | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 138801 GCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTG 138860 || |||||||| || |||||| ||||| ||||| || | || |||||||| || | Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 138861 CCAAGAGGCAACGCTCT 138877 ||| | || |||||||| Sbjct 657 CCACGTGGAAACGCTCT 641 >seq216476 Length=3150 Score = 113 bits (124), Expect = 6e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 138243 TACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTC-GTCAGCGTGTTCCTGATGTA 138301 || || |||||| ||||||||||||| || | ||| || || ||| ||||| | || Sbjct 2950 TATAATGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTA 2891 Query 138302 TCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCG 138361 ||| |||| ||||| |||||||||||| || |||||||| ||||| || || | Sbjct 2890 TCCACTGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTG 2831 Query 138362 ATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGG 138421 |||| | | || |||| || || ||||| |||| | ||||| |||||||||||||| Sbjct 2830 ATTCATCCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGG 2772 Query 138422 CGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTAC 138472 || || || | || | ||||| | || |||||||||| || || Sbjct 2771 AGTTGCCAAAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAGCGAC 2721 >seq214663 Length=1678 Score = 113 bits (124), Expect = 6e-20 Identities = 196/280 (70%), Gaps = 9/280 (3%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||| | | ||| | || |||| ||||| || || || | || |||||| | || Sbjct 1358 TTCTACAACTGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTG 1417 Query 135434 ATGATTCCTACTCTTCTCGCAG-CTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | | || |||| |||||| | || |||||||| || | Sbjct 1418 ATGATCCCTAC-CTTATTGACGACAACT-TCTGTATTTATTATCGCCTTCATCGCCGCCC 1475 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 || || |||||||| || || || || | |||| |||||||| || | ||| |||| | Sbjct 1476 TTCTAGTAGATATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACA 1535 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCA 135611 | || | |||||||| | |||||||| || || ||| | | ||||| || || | Sbjct 1536 ATATTACCTCTGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAA 1595 Query 135612 TCTGGG-----AAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 | |||| ||||||| ||| ||||||||||| |||| Sbjct 1596 TTTGGGATGGGAAGCTGCATCTGTTGATGAGTGGTAATAT 1635 >seq680530 Length=586 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 || ||||| | ||||| || || || ||||||||||| | | |||||||||| |||| Sbjct 50 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATAC 109 Query 135647 AATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATG 135706 ||||||||||||||| | ||| | || | ||||| | | ||||| | ||| ||| Sbjct 110 AATGGTGGTCCTTATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATG 169 Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGC 135743 ||||| ||||||||||| || ||| ||||| |||| Sbjct 170 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGCATGC 206 >seq428484 Length=423 Score = 105 bits (116), Expect = 8e-18 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 138508 CAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTG 138567 ||||||| || || ||| | || |||||||| |||||||| ||||||||||| |||| Sbjct 218 CAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACTG 277 Query 138568 CTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACT 138627 ||||||| | ||||| ||||||||||| |||||||| ||||| |||||| | || Sbjct 278 CTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGG--TTACA 335 Query 138628 TCTTT 138632 ||||| Sbjct 336 TCTTT 340 >seq40677 Length=4500 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 135701 TACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTC 135760 || |||||||| ||||||||||| || || ||||||||||| ||||||||| ||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 135761 GCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAA 135820 || || ||| | | |||||| |||||||||| |||||| || | ||||| |||| ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 135821 GG 135822 || Sbjct 34 GG 33 >seq37697 Length=321 Score = 89.7 bits (98), Expect = 6e-13 Identities = 155/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 138243 TACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTAT 138302 || || |||||| ||||||||||| | || | ||| || || ||| ||||| || ||| Sbjct 3 TATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTAT 62 Query 138303 CCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGA 138362 || |||| ||||| | |||||||||| || |||||| | || || || || | Sbjct 63 CCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTGT 122 Query 138363 TTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGC 138422 ||| | | || |||| || || || || |||| | ||||| |||||||||| ||| Sbjct 123 TTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGGA 181 Query 138423 GTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGG 138466 || || || | || | ||||| | || |||||||||| Sbjct 182 GTTGCCTAAATATTAGGCGTGGCTCTACGATGCACTATTCATGG 225 >seq182135 Length=1057 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 138737 AGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCT 138796 ||| |||||||||||||| ||||| ||||| ||||| || |||||| | || || ||| | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 138797 GCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGT 138856 ||||| || ||||| || ||||| ||||| ||||| || | || ||| | || || Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGT 836 >seq1484923 Length=1633 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 138571 ACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCT 138630 |||| | ||||| ||||||||||| |||||||| ||||| |||||| | || |||| Sbjct 1541 ACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 1600 Query 138631 TTATGCTCTTTGTTCCCGTCATGGGTCTCTGGA 138663 ||||||| ||||| ||||||| ||| | |||| Sbjct 1601 TTATGCTATTTGTACCCGTCACCGGTTTATGGA 1633 >seq398894 Length=318 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || ||||| || || | || || | || ||||| || || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 135434 ATGATTCCTACTCTTCTCGCAG--CTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | || | || | |||||| | || ||||||||||| | Sbjct 200 ATGATCCCTAC-CTTATTG-AGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCC 257 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || || |||||| |||||||| || | || ||||| | Sbjct 258 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 317 Query 135552 A 135552 | Sbjct 318 A 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615552232732800