Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq68655 161 3e-35 seq539347 152 1e-32 seq533011 93.3 1e-14 seq214663 87.8 5e-13 >seq68655 Length=5599 Score = 161 bits (178), Expect = 3e-35 Identities = 187/247 (76%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 19630 AGTGGGAACT-ATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCA 19688 |||||||||| | || || || || ||| | || ||||| || |||||| |||| Sbjct 729 AGTGGGAACTTAATTTCCACATG-GGTATGCGTCCTTGGATTGATGTTGCATATTCAGCT 787 Query 19689 CCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAG 19747 | | |||| || |||| | ||||| | ||||||| |||| ||| || ||| Sbjct 788 CATGTTGCAGCTACTACTGCTAT-TTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTT 846 Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||| | || |||||||||||||| ||| ||||| | |||||||| ||||| Sbjct 847 TGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGA 906 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 ||||| |||||||||||||| ||||||||| | ||| | ||||| |||||||| || || Sbjct 907 GCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC 966 Query 19868 TCTTTTC 19874 || ||| Sbjct 967 CCTATTC 973 >seq539347 Length=3493 Score = 152 bits (168), Expect = 1e-32 Identities = 119/141 (84%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||| | || |||||||||||||| ||||||||| | |||||||| ||||| Sbjct 3 TGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 62 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 ||||| |||||||||||||| ||||||||| | ||||| ||| | |||||||| || | Sbjct 63 GCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGTTT 121 Query 19868 TCTTTTCTCTGCTATGCACGG 19888 || ||| |||||||||| || Sbjct 122 CCTATTCACTGCTATGCATGG 142 >seq533011 Length=4556 Score = 93.3 bits (102), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || || || || ||||| |||||||| ||||||||||| ||| | || | || ||||| Sbjct 2167 TACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTTCCCATAGTTATTTTGGC 2108 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 |||| ||||| ||||||||| ||| |||| ||| ||||||||| ||||| |||| Sbjct 2107 CGATTTATATTCCAATATGCTAGTTTGAATAGCTCTGATTCTTTACACTTCTTGGCTGCT 2048 Query 20070 A 20070 | Sbjct 2047 A 2047 >seq214663 Length=1678 Score = 87.8 bits (96), Expect = 5e-13 Identities = 171/253 (68%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 19314 GAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCT 19373 || || || || || | || |||||| | || | ||||| ||| |||| | | | Sbjct 1382 GACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTACCTTATTGACGACA 1441 Query 19374 ACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGT 19433 ||| || ||||| ||||||| ||||| || | | |||||||| ||||| || ||| Sbjct 1442 ACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCGT 1501 Query 19434 GAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCA 19493 |||| ||||| || || ||| | ||| |||||||||||| ||||| | | | || Sbjct 1502 GAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCCT 1561 Query 19494 AGCTCCAATGCAATAGGACTGCACTTTTATCCGAT-----CTGGGAAGCCGGCACTTTAG 19548 | || || || || ||||||| || || || |||||||| | || | | Sbjct 1562 ACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTTG 1621 Query 19549 ATGAGTGGTTATA 19561 ||||||||| ||| Sbjct 1622 ATGAGTGGTAATA 1634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141728586558492