Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq68655 145 1e-29 seq539347 127 3e-24 seq542539 102 1e-16 >seq68655 Length=5599 Score = 145 bits (160), Expect = 1e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | || | ||||||||||||||||| |||||| |||||||| | Sbjct 729 AGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTC 788 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 ||| |||| || ||| | ||| | ||||||| | ||| | | || | | Sbjct 789 ATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTG 848 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | |||||||||||||| || || || || |||||| | ||| | |||||||| ||||| | Sbjct 849 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAGC 908 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGG 212144 | |||||||||||||| |||||||| ||| |||| | || ||| | ||||| || Sbjct 909 ACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGCGG 963 >seq539347 Length=3493 Score = 127 bits (140), Expect = 3e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085 || || |||||||||||||| || || || || |||||||| ||| | |||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145 || || |||||||||||||| |||||||| ||| |||||| || || | ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTA 212179 ||||| |||||||||| ||||| |||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTC-CTTGGTA 152 >seq542539 Length=11310 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212419 TTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGAT 212478 ||||| ||||| ||||| || |||||| | |||| || || |||||||| |||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 212479 GTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTC 212538 | | ||| | || ||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 212539 CCACTTGACTTAGC 212552 || || |||||||| Sbjct 6973 CCTCTAGACTTAGC 6960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791588753590920