Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq539347 129 7e-25 seq68655 113 5e-20 seq532379 84.2 2e-11 >seq539347 Length=3493 Score = 129 bits (142), Expect = 7e-25 Identities = 133/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 171122 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 171181 |||||||||||||| |||| ||||| ||||| |||||||| ||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 171182 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 171241 || |||||||| || ||||| || ||||| ||| ||||||||| || | ||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 171242 AGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGA 171294 || |||| ||| ||||| ||||| | || || ||| | | ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGA 172 >seq68655 Length=5599 Score = 113 bits (124), Expect = 5e-20 Identities = 165/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 171029 GGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAG-T 171087 || ||| | |||||||| ||| ||||| ||||| | ||| |||||| | | | | Sbjct 752 GGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTCATGT---TGCAGCTACTACTGCT 808 Query 171088 ATTC-CTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 ||| |||| | || || | ||| | | || | |||||||||||| |||| ||| Sbjct 809 ATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTGATGGTATGCCTTTAGGAATC 868 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| |||||| | ||| | || ||||| ||||| |||||||| || ||||| || Sbjct 869 TCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 928 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTG 171254 ||||| ||| |||| |||| ||| | ||||| ||| || ||||||| Sbjct 929 TTCCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 977 >seq532379 Length=15352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 171825 GATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCA 171884 || |||||||| || | ||||||||||| || || || || ||||||||||| | || Sbjct 14388 GACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 14447 Query 171885 ATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCA 171944 | || ||||||| || || ||||| || || | ||||| || |||| | | || Sbjct 14448 TTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCATGAT-TGGCT 14506 Query 171945 TCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCT 172004 || ||| | || || || |||||||| |||| ||| || || |||| || | Sbjct 14507 AGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAATAGT 14566 Query 172005 ATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTT 172055 | | || | | ||| | |||||||| || || |||||||||||| || Sbjct 14567 TTAGCACA---TTTGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTTT 14613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558993823089480