Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq542047 100 3e-16 >seq542047 Length=2783 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 1749 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 1690 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| || ||||| || |||| | ||| || || || |||||| Sbjct 1689 CCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAG 1630 Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446 || || || || ||| || ||||| Sbjct 1629 ATGCCCTCAAC-GCAGGCGAAGGC 1607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610630700664120