Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq421987 118 7e-22 seq122391 104 2e-17 seq527869 96.9 2e-15 seq527793 93.3 3e-14 seq397462 93.3 3e-14 seq251864 91.5 1e-13 seq1492279 82.4 5e-11 >seq421987 Length=338 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 112 AAGCAAGTTCCCTTGGCTGTGGTTTCGCTGGNTAGTAGACAGGGACAGTGGGAATCTCGT 53 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 52 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 18 >seq122391 Length=5611 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||||||| || | || | || || ||| |||||| ||||| |||||||||| | Sbjct 2938 CCACCTCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 2879 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||||||| ||||| || || | ||||| || | || Sbjct 2878 AAGGTGCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATAAGCCTCTGTTGGTCCGGAGGA 2819 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || || ||||| | | |||||| ||| ||||| Sbjct 2818 ATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCTGAACTCTCAACC 2759 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACA 38325 || | || ||||| || || || | ||| || || || |||||||| | || || Sbjct 2758 TCAAGAGTGATAGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCATCTGTTTCA 2704 >seq527869 Length=311 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 176 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 117 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 116 GCCTGTATTTAGCCTT 101 >seq527793 Length=311 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| | ||||||| |||||||||||||||||||||||| | Sbjct 176 CTCTCTTTTCAAAGTCCTTTTCATCATTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 117 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 116 GCCTGTATTTAGCCTT 101 >seq397462 Length=302 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 136 CTCTCTTTTCACAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 195 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 196 GTCTGTATTTAGCCTT 211 >seq251864 Length=1131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| || |||||||||||||||||||| ||||||||| | || || |||||||| Sbjct 1012 AAGCATGTCCCCTTGGCTGTGGTTTCGCTGGATAGTAGACATGGACAGTGGGAATCTCGT 1071 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||| | ||| || ||||||||||||| Sbjct 1072 TAATCCATTCCTACGCATCGCTAATTAGATGAC 1104 >seq1492279 Length=5800 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| | || |||||||||||||| ||| || ||||| |||||||||| Sbjct 3474 CCACCCCTCAGCCTCAGGACCAAATGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCT 3533 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || | || ||||| ||||| ||||| | ||| || || | ||| Sbjct 3534 AATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGTGGG 3593 Query 38211 ACGCCTTCTTTGTCC 38225 | |||||| |||||| Sbjct 3594 ATGCCTTCCTTGTCC 3608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328490404717517