Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq68655 149 7e-31 seq507140 147 2e-30 seq216476 129 7e-25 seq550293 116 4e-21 seq428484 107 2e-18 seq539347 105 7e-18 seq542539 96.9 4e-15 seq121670 89.7 6e-13 >seq68655 Length=5599 Score = 149 bits (164), Expect = 7e-31 Identities = 184/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 166387 GGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAC 166446 |||||||| |||||| | || || | | |||||||||||||||||| || ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 166447 TCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 166506 || || | ||||||||| | | || | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 166507 TTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAA 166566 || | ||| | ||||| | || ||| ||| || |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 166567 GCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGT 166626 ||||||||||||||||| ||||| || ||||| ||| | ||| |||| ||||||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 166627 GGGTCACTTTTC 166638 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq507140 Length=321 Score = 147 bits (162), Expect = 2e-30 Identities = 182/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 167705 ATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTT 167764 |||| ||| ||||| ||||| || || || ||||| || | || || ||||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 167765 GCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCAT 167824 || ||| ||||| || ||| |||||||| ||||| | || ||| | || || || ||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 167825 AACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTG 167884 || |||||| | ||||| || ||||||||||||||||| | | |||| | || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 167885 CTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCA 167944 || | || || ||||| | || ||||| || ||||| | ||| || ||||| ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 167945 AACACTTTC 167953 || || ||| Sbjct 289 AATACCTTC 297 >seq216476 Length=3150 Score = 129 bits (142), Expect = 7e-25 Identities = 178/241 (74%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 167625 TAGGATTTATGCTTCGGCAATTTGAG-ATAAGTAGA-CTAGTAGGTATCCGTCCTTACAA 167682 |||| || ||| | || |||||||| || | | || ||| | || | || | ||| || Sbjct 3003 TAGGTTTCATGTTACGCCAATTTGAACATGA-TCGATCTATTTAGT-TGCGACTTTATAA 2946 Query 167683 TGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT-GTGTCTGTTTTTCTCATCTATCCTC 167741 ||| || | || |||||||| |||| ||| ||| || || || || || | ||||| | Sbjct 2945 TGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCAC 2886 Query 167742 TCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCC 167801 | || || || |||||||||||| ||| |||||||| |||||||| ||| ||||| Sbjct 2885 TGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCA 2826 Query 167802 TACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTG 167861 | || ||| | ||| ||| ||||| |||| | | ||||| || |||||||||||||||| Sbjct 2825 TCCTTTTCTTCTAGGATTT-CATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTG 2767 Query 167862 C 167862 | Sbjct 2766 C 2766 >seq550293 Length=8024 Score = 116 bits (128), Expect = 4e-21 Identities = 138/186 (74%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 167676 CTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCT 167735 |||| ||||| || | || ||| |||| |||||| | ||||| | | | || | || | Sbjct 7521 CTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTAT-TTTGTTTATCTATTCTTTATTT 7463 Query 167736 ATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTA 167795 |||| ||||| || || |||||||||||||| || || | | ||| ||||||||| Sbjct 7462 ATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGATATTTA 7403 Query 167796 GATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGG 167855 ||||| | | ||| | || |||| ||||| |||| | | ||||| || |||||||||| Sbjct 7402 GATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATATGATGG 7343 Query 167856 GAGTTG 167861 |||||| Sbjct 7342 GAGTTG 7337 >seq428484 Length=423 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 167942 GCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACT 168001 ||||| || ||| || ||| | | ||||| || || ||||||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 168002 GCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCAC 168061 |||||||| || ||||| ||||| |||||| ||||||| |||||| |||||||| || Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTT--AC 334 Query 168062 TTCTTT 168067 ||||| Sbjct 335 ATCTTT 340 >seq539347 Length=3493 Score = 105 bits (116), Expect = 7e-18 Identities = 110/143 (77%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 166510 TCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCA 166569 ||||| | ||||| | || ||| ||| || ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 166570 GAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGG 166629 |||||||||||||| ||||| || ||||| ||| | |||||||| |||||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 166630 TCACTTTTCTCGGCAATGCACGG 166652 | || ||| | || ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGG 142 >seq542539 Length=11310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 166893 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 166952 |||||| ||| ||| ||||| || || | | ||| || | ||||| | | | || Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 166953 TTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGC 167012 |||||| ||| || ||||||||||| || ||| ||||||| ||||| | |||||||| Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 167013 TCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||||||||||| || | |||| || ||| Sbjct 6983 TCACAACTTCCCTCTAGACTTAGCTGATGTTGA 6951 >seq121670 Length=2540 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 166932 TCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGA 166991 ||| |||| ||| | || |||||||| ||| | | |||| |||| || ||||||| Sbjct 385 TCAAGGTCATGTAATTAATACTTGGGCTGATAACATTAACCATGCTAACCTTCGTATGGA 326 Query 166992 AGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||||||| | ||||||||||||||||||||| || | |||| || ||| Sbjct 325 AGTAATGCACGTACATAATGCTCACAACTTCCCTCTAGACTTAGCTGTTGTTGA 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556017064687200