Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7373 104 3e-17 seq1268 102 9e-17 seq1483961 96.9 4e-15 seq355529 95.1 1e-14 seq567287 93.3 5e-14 seq535204 93.3 5e-14 seq529893 93.3 5e-14 seq551564 91.5 2e-13 seq535862 87.8 2e-12 seq42086 87.8 2e-12 seq11163 87.8 2e-12 seq565212 86.0 7e-12 seq251464 86.0 7e-12 seq109153 86.0 7e-12 seq1512503 84.2 2e-11 seq11756 84.2 2e-11 seq50007 82.4 8e-11 >seq7373 Length=3191 Score = 104 bits (114), Expect = 3e-17 Identities = 87/105 (83%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 679 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 620 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 |||||||| |||||||| ||||||| ||||| ||| |||||| Sbjct 619 GTGGGTTCAAACCCCACTTCTGACAAGTTATTTTTG---TTTTTG 578 >seq1268 Length=3421 Score = 102 bits (112), Expect = 9e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 723 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 782 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| ||||||||| Sbjct 783 GTGGGTTCGAACCCCACTTCTGACAAAT 810 >seq1483961 Length=8378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/95 (83%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 211 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 152 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||||| || || || Sbjct 151 GTGGGTTCAAACCCCACTTCTGACAACTTCTTTTT 117 >seq355529 Length=1642 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1453 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 1394 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| |||||||| ||||||| || || Sbjct 1393 TGGGTTCAAACCCCACTTCTGACAATTTTTT 1363 >seq567287 Length=4819 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 3804 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 3745 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 3744 GTGGGTTCAAACCCCACTTCTGACA 3720 >seq535204 Length=6443 Score = 93.3 bits (102), Expect = 5e-14 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2564 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2623 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 ||||||| |||||||| |||||| |||| || || Sbjct 2624 TGGGTTCAAACCCCACTTCTGACACAATTGTTTTT 2658 >seq529893 Length=6873 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4162 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 4221 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 4222 GTGGGTTCAAACCCCACTTCTGACA 4246 >seq551564 Length=5390 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 219 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 162 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 |||||| ||||||||| ||| || |||| || |||| |||| Sbjct 161 GGGTTCAAACCCCACAGCTGTCA---TATTTTTCGAATGTTTG 122 >seq535862 Length=6557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4813 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4870 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| ||||||||| ||| || ||| || || Sbjct 4871 TTCAAACCCCACAGCTGTCATATTTTTTTT 4900 >seq42086 Length=9292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 642 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 585 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| ||||||||| ||| |||| Sbjct 584 GGGTTCAAACCCCACAGCTGTCAAA 560 >seq11163 Length=907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 660 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 601 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 | |||||| |||||||| |||||| Sbjct 600 GCGGGTTCAAACCCCACTTCTGACA 576 >seq565212 Length=4372 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2364 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2421 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||| ||||||||| ||| || |||| || Sbjct 2422 GGGTTCAAACCCCACAGCTGTCACAATTTTT 2452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3449 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3506 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 |||||| ||||||||| ||| || Sbjct 3507 GGGTTCAAACCCCACAGCTGTCA 3529 >seq251464 Length=997 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTG 126325 |||||| ||||||||||||||||||||||||| | ||| ||||| || || ||||| Sbjct 813 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGG-----TCCGGGGCGTG 867 Query 126326 GGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||| |||||||| |||||| || ||| Sbjct 868 GGTTCAAACCCCACTTCTGACATTTTTTTA 897 >seq109153 Length=3375 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1391 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1448 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||| ||||||||| ||| |||| | ||| Sbjct 1449 AGGTTCAAACCCCACAGCTGTCAAAATCTTA 1479 >seq1512503 Length=876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 724 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 667 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 |||||| ||||||||| ||| || Sbjct 666 GGGTTCAAACCCCACAGCTGTCA 644 >seq11756 Length=1768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 928 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 871 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 870 GGGTTCAAATCCCACAGCTGTCATATTTTT 841 >seq50007 Length=4942 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1916 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1859 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| | |||||| || Sbjct 1858 GGGTTCAAATCCCACAGCTGTC--ATTATTTTT 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545850917182680