Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq122391 86.0 4e-12 >seq122391 Length=5611 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| |||| ||||| ||||||||||||||||| || || || Sbjct 3033 GACAAGGAGGGTATCCCTCCTGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAG 3092 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| ||| |||| |||||||| ||||||||||| ||||| ||||| Sbjct 3093 GATGGGCGCACTTTGGCTGATTACAACATTCAGAAGGAGTCTACCCTTCA 3142 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||||||||| |||||||||||||| |||||||| |||||| || |||| |||| Sbjct 2827 ACCAACAGAGGCTTATCTTTGCTGGAAAACAACTGGAAGATGGCCGCACCTTGGCTGATT 2886 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 |||| ||||||||||| || || || || Sbjct 2887 ACAACATTCAGAAGGAGTCCACCCTCCA 2914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351221208869278