Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq542047 379 4e-100 >seq542047 Length=2783 Score = 379 bits (420), Expect = 4e-100 Identities = 599/845 (71%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||||||||||||| | ||||| || ||| | Sbjct 1208 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCC 1267 Query 42372 GCCGGCTGGGA---GTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | | || || | |||| ||| || || | || ||| Sbjct 1268 CGCCACTGGGACACGACGCTCTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 1327 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 1328 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGAC 1387 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | ||| Sbjct 1388 GTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 1447 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || ||| ||||| || ||||||| | || ||||||| || ||||||| || Sbjct 1448 TCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGAC 1504 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGCGCT 42664 | || ||| ||||| || || || ||| || | | ||||| |||||||| || Sbjct 1505 CGCCTCTTCCGCGCCATCGACACCAT-CCCAGCCGTGCGCCGCAAGGCCGACTGGGCCCT 1563 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 ||||||||| | || ||| |||| |||| | | || ||||| || || Sbjct 1564 TCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 1619 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 | ||||||||||||||||||||| ||||| ||||||||||||||||| || || Sbjct 1620 TTGAGGGCATCTTCTTCTCGGGCTCCTTCTGTGCCATCTTCTGGCTCAAGAAGCGGGGCC 1679 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | | Sbjct 1680 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 1739 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | ||| | ||| | |||| ||||| || || || Sbjct 1740 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTCGACGAGTCCCGCGT 1794 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | ||| || | ||||||||||| || |||| |||||| || | |||| || Sbjct 1795 CTTCGAGATCGTCTCTGAGGCCGTGGACATAGAGAGGGAGTTTGTCTGTGACGCGCTCCC 1854 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | | || |||||||||||| |||||||||| || |||||||| ||| ||||||||| Sbjct 1855 CTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGA 1914 Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || || || || | | |||| || | ||||||||| | | ||| ||||||| Sbjct 1915 CCGCCTGCTCATGGC-GCTGGGCTGCAACAAGCTCTACAACGCCACCAACCCGTTCGACT 1973 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| | Sbjct 1974 GGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 2033 Query 43141 ACCAG 43145 ||||| Sbjct 2034 ACCAG 2038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925668350962320