Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq542047 149 1e-30 >seq542047 Length=2783 Score = 149 bits (164), Expect = 1e-30 Identities = 559/869 (64%), Gaps = 12/869 (1%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||| || ||| | || ||||| | || |||||||| ||||| |||| ||| Sbjct 1175 TTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 1234 Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 ||| ||||||| || ||||| | | |||| | | ||||| | || ||| Sbjct 1235 ACCGCCGAGGAGGTGGACCTCTC--CTCCGACGCCCGCCACTGGGACACGACGCTCTCCA 1292 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 ||||||| || || |||||| ||| | || | || ||||| | |||||| || || | Sbjct 1293 ACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCG 1352 Query 243053 TGATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAA 243111 || | || || || ||| || | ||| || || ||| | ||||| || Sbjct 1353 TGCTCGAGAACCTCGCCTCCAGGTTCA-TGTCCGACGTGCAGGTCGCCGAGGCCAGGGCC 1411 Query 243112 TTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATC 243171 || || | | ||| | || ||| ||||| || || || | || || ||| Sbjct 1412 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTGCTCATC 1471 Query 243172 GACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACATT 243231 || | || || || ||| || || ||| ||||||||| | ||| Sbjct 1472 GAGACCTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCATC 1531 Query 243232 CCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCATTT 243291 || || || | |||||| | ||||| | ||| | || ||| | || Sbjct 1532 CCAGCCGTGCGCCGCAAGGCCGACTGGGCCCTTCGCTGGATCGACGGCGGGGAGCGCTTC 1591 Query 243292 GCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGC 243351 || ||||| ||||||||| | |||||||| || || | || || || ||||| Sbjct 1592 GCCGAGCGCATCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGT 1651 Query 243352 GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTC 243411 |||||||| ||||| ||| || | ||||| |||||| | || |||||| || Sbjct 1652 GCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 1711 Query 243412 ATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAG 243471 ||| |||||||||||||| ||| | |||| || | || | || | Sbjct 1712 ATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACATCCTGCGC 1771 Query 243472 AACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAA 243528 |||||| || | || || ||| | ||| || | || || || || | || Sbjct 1772 GGCAAGCTCGACGAGTCC---CGCGTCTTCGAGATCGTCTCTGAGGCCGTGGACATAGAG 1828 Query 243529 AAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATG 243588 | ||| || | || ||||| | || ||| ||| | ||||||||| || |||||| Sbjct 1829 AGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATG 1888 Query 243589 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTG 243648 | ||||||||||| ||||| ||||||||| | |||| ||||| || | | || | Sbjct 1889 AGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGCTGCAACAAGCTC 1948 Query 243649 TACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAAC 243708 |||||| ||| ||||| || | || ||||||||||| ||||| || || || || ||| Sbjct 1949 TACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAAC 2008 Query 243709 TTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||||| ||||| ||| | || || || Sbjct 2009 TTCTTCGAGAAGCGCGTCGGCGAGTACCA 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1080529451980450