Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq542047 163 3e-35 seq1489163 118 1e-21 seq1482391 86.0 7e-12 >seq542047 Length=2783 Score = 163 bits (180), Expect = 3e-35 Identities = 313/453 (69%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 2035 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 1976 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | |||||| || |||| | |||| || Sbjct 1975 CCAGTCGAACGGGTTGGTGGCGTTGTAGAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGG 1918 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 1917 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 1858 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| ||| ||| || |||| || |||||||| || ||||| || Sbjct 1857 CAGGGGAGCGCGTCACAGACAAACTCCCTCTCTATGTCCACGGCCTCAGAGACGATCTCG 1798 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | | | | | | ||||| | ||| | || ||| || ||| || Sbjct 1797 AAGACGCGGGACTCGTCGAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAAG 1741 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 1740 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 1681 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || ||||||||||| | |||||| || ||||| || || |||||||||||||| ||||| Sbjct 1680 AGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCCTCA 1621 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 1620 ACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 1588 >seq1489163 Length=4104 Score = 118 bits (130), Expect = 1e-21 Identities = 385/588 (65%), Gaps = 14/588 (2%) Strand=Plus/Minus Query 10610 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 10669 ||| | ||| ||||||| ||| || | |||||| || | |||||| || ||| || Sbjct 1209 CGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCTGAACCCG 1150 Query 10670 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCTGGCG 10729 | ||| || | || | || || ||| ||| ||| |||||||| ||||| Sbjct 1149 GGCGTGCGCATGGCCACCACGCTGAGGGACACGTCGGGGTCCAGCTTCTTGT---TGGCG 1093 Query 10730 -TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTA 10786 || ||||| | |||| |||||| |||||||| ||| || |||| | || Sbjct 1092 CTGTGCACCCGGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCGACGGACACCTGC 1033 Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| || ||| |||| ||||| || |||||||| || Sbjct 1032 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 973 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 |||||||| | || ||| | || ||||| |||||||| || | || || || Sbjct 972 GCGATGACGATGACGCCGCTGTCACCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 913 Query 10907 ATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGAC 10965 | || || || | || || || | | || | |||| | ||| ||| ||||| Sbjct 912 AGCGTCTGCTCCCTCTCGTCGTTACCCCCGCCGATG-CCCGTGCCGCGCTGCCGGCCGAC 854 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 |||||| || || |||||||| || | ||||| || || ||| || || | Sbjct 853 GGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTCGAACAG 794 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACA 11085 || || || | | || || || ||||| ||||| || | || | | |||| || Sbjct 793 GTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGA-CA 735 Query 11086 TTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| || || |||||||| || ||| || || |||||||||| Sbjct 734 GCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCG 675 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGT--GGGATCCTGGCACC 11190 |||| || || || || | ||||| | | |||||||| || || Sbjct 674 TCCCCGGCGGGCCGGCCAGCA--GCACCCCCTTGGGGATCCTCGCCCC 629 >seq1482391 Length=7374 Score = 86.0 bits (94), Expect = 7e-12 Identities = 166/242 (69%), Gaps = 16/242 (7%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || | |||| |||||| || | | ||||| |||||||||||||||| Sbjct 3918 GTTGGTGGCAGCAACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAG 3859 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCA-CTG---- 10951 || ||||||| || || || | |||||| ||| | |||||| | ||| Sbjct 3858 TAGCTGATTGAGAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCC 3805 Query 10952 -CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACG 11010 | |||| | || || || ||||||||||| | || ||||| || || ||| || Sbjct 3804 TCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTCCTT 3745 Query 11011 GGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACA 11068 ||| |||| |||| ||| || || | |||||| ||||| |||||||| ||||| Sbjct 3744 GGC--CTTCTTGAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACG 3687 Query 11069 AA 11070 || Sbjct 3686 AA 3685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585543120367560