Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq68655 178 2e-39 seq507140 165 1e-35 seq539347 149 8e-31 seq216476 127 2e-24 seq550293 100 3e-16 seq542539 96.9 4e-15 seq214663 89.7 6e-13 seq398894 84.2 3e-11 seq40677 84.2 3e-11 seq680530 82.4 9e-11 >seq68655 Length=5599 Score = 178 bits (196), Expect = 2e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 7932 CACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCA 7991 ||||||| || ||||| || || |||||||| | || | ||||||||| || ||||| | Sbjct 977 CACTGAATAGGGAACCGCCGAATACACCAGCTATACCTAACATGTGGAATGGATGCATAA 918 Query 7992 GGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAG 8051 |||||||||||||||| ||||| |||| ||| |||||| ||||||||||| || | || Sbjct 917 GGATGTTGTGCTCTGCCTGGAATACAATCATAATGTTGAAAGTACCAGAGATTCCTAAAG 858 Query 8052 GCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTG 8111 ||||| | ||| | || ||| ||| | ||| || | | ||| | ||||| | | Sbjct 857 GCATACCATCAAAAAAGCTTACTTAACCAATAGGGTAAATCAAGAAAATAGCAGTAGTAG 798 Query 8112 CAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAA 8171 | ||||| |||| || ||||| ||| ||||| ||||||||||| | || || || Sbjct 797 CTGCAACATGAGCTGAATATGCAACATCAATCCAAGGACGCATACCCATGTGGAAATTAA 738 Query 8172 GTTCCCACTCACGACC 8187 |||||||||||||||| Sbjct 737 GTTCCCACTCACGACC 722 >seq507140 Length=321 Score = 165 bits (182), Expect = 1e-35 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 6600 CTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTAT 6659 |||| || || | ||| || ||| ||||||| ||||| || ||||| | ||| | Sbjct 319 CTTGAGTTGGGTTAAAAGCACAGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGT 260 Query 6660 TCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACAC 6719 | ||||| || || || |||||||| || |||| || ||||||| | | || || | Sbjct 259 TTTCTACGGTCGCTCCATGAATAGCGCATAGCAGAGCCGCACCTAATACTCGGGCAACTC 200 Query 6720 CCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGC 6779 ||||||||||||| ||||| | |||||| || || || || || | ||| || | ||| | Sbjct 199 CCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATC 140 Query 6780 GGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGAT 6839 | ||||||| ||| || ||||| ||||||||||||||||| || || | || |||| Sbjct 139 GAAATATCGTTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCACCAGTGGAT 80 Query 6840 ACATGAGAAAGACAGACACAAAGACAGCAAT 6870 | || || || ||||| ||||| ||| |||| Sbjct 79 AAATAAGGAATACAGAAACAAAAACAACAAT 49 >seq539347 Length=3493 Score = 149 bits (164), Expect = 8e-31 Identities = 129/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 7906 AGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGAC 7965 ||||||||| | ||||||||||| ||| |||| || |||| || || |||| ||| || Sbjct 158 AGAGGTTACCAAGGAACCATGCATAGCAGTGAATAGGAAACCGCCGAATACAC-AGCTAC 100 Query 7966 GCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTA 8025 || | ||||||||| || ||||| ||||||||||||||||| ||||| |||| ||| | Sbjct 99 ACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAA 40 Query 8026 GTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGA 8064 |||||| ||||||||||| || | ||||||| | ||||| Sbjct 39 GTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 1 >seq216476 Length=3150 Score = 127 bits (140), Expect = 2e-24 Identities = 183/253 (72%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 6713 GCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGT 6772 || || |||||||||||||| ||||| | | |||| || || || || | || || || Sbjct 2766 GCAACTCCCATCATATGAAATGGGTTCAACATCCAATTATGAAATCCTAGAAGAAA-AGG 2824 Query 6773 AAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCG 6832 | ||| | || |||||||| |||||||| |||| |||||||||||| || || || Sbjct 2825 ATGAATCAAAACATCGCTGCTACACCAAAACTCGGCACAAAGAACCAACCAGATTGCCCC 2884 Query 6833 AGAGGATACATGAGAAAGACAGACAC-AAAGACAGCAATGGGACCAGAAAACGCGATTGC 6891 || ||||| | || || || || || ||| ||| |||| |||||||| || | |||||| Sbjct 2885 AGTGGATAAAGAAGGAATACGGAAACAAAAAACAACAATTGGACCAGAGAATGGGATTGC 2944 Query 6892 ATTGTAGGGACGAATACCGACTAGACGTGCGATC----TCAAACTGCCGAAGCATGAAAC 6947 ||| || | || | || | |||| ||||| ||||| || || | |||||||| Sbjct 2945 ATTATAAAGTCGCA-ACTAAATAGA---TCGATCATGTTCAAATTGGCGTAACATGAAAC 3000 Query 6948 CTATAAGGGCAAA 6960 ||| || | |||| Sbjct 3001 CTAGAATGCCAAA 3013 >seq550293 Length=8024 Score = 100 bits (110), Expect = 3e-16 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 6716 ACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAG 6775 || |||||||||||||| ||||| | | |||| || || || | || | ||| | | | Sbjct 7339 ACTCCCATCATATGAAATGGGTTCAACCTCCAATTATGTAAACATTGGAAGAAAATGATG 7398 Query 6776 AAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGA 6835 || | ||||||| ||| | | || || ||||||||||||| || || ||||| Sbjct 7399 AATCTAAATATCGTTGCTATGCTGAAACTCGATGCAAAGAACCAACCAGATTGCCCGAGT 7458 Query 6836 GGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTG 6895 ||||| || | || | | | ||||| | |||||| |||| ||| |||| ||||||||| Sbjct 7459 GGATAAATAAAGAATAGATAAACAAA-ATAGCAATTGGACTAGAGAACGAGATTGCATTA 7517 Query 6896 TAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAG 6954 || | || | | || ||| || || | ||||| | | | |||||||||||| | Sbjct 7518 TAAGATCGTA-ATTGAACAGACCGAGCAAGTTCAAATTAATGTAACATGAAACCTATTGG 7576 Query 6955 GGCAAAGGC 6963 ||||| || Sbjct 7577 TGCAAAAGC 7585 >seq542539 Length=11310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| || |||| | ||| ||||||||||||||||||||||| | ||||| ||||||| Sbjct 6951 TCAACATCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTTATGCATAACTTCCACA 7010 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| ||||||||||| | || ||||| || | | | ||||||| || |||| Sbjct 7011 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATCAATAATGCGACCTTAACTATCA 7070 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGG 7681 | | || || ||||| ||| ||| |||||| Sbjct 7071 ACTACAGATTGATTGAAATTG-AACGCTTGAGG 7102 >seq214663 Length=1678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/273 (68%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 8254 CCACTCATCAAGAGAAGCTGCT-----TCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 ||||||||||| ||| || ||| ||||| || || || ||||| | | || || Sbjct 1629 CCACTCATCAACAGATGCAGCTTCCCATCCCAAATTGGGTACAAGTGCAATCTGATCGCC 1570 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||| ||| | || | |||||||| | || ||||| | || | | ||||||| Sbjct 1569 GCAGAAGTAGGGATAATAACACCAGAGGTAATATTGTTTCTGTAAAGTAAAGAACCAGAA 1510 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA- 8427 || | ||||| || || ||||| || || || | || |||| ||| |||| || || Sbjct 1509 ACAAGCTCACGAATACCATCAATATCTACTAGAAGGGCGGCGATGAAGGCGATAATAAAT 1450 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 ||| | || | | | | ||||| ||||||| |||| ||||| |||| || || Sbjct 1449 ACAGA-AGTTGTCGTCAATAAGGTAGGGATCATCAAAACACGAAACCATCCGATGTATAG 1391 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 |||||||| || |||| |||||| |||| Sbjct 1390 ACGATTGTCACTGCTAGTTATCCAGTTGTAGAA 1358 >seq398894 Length=318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 8342 TTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGA 8401 ||||| ||||| | | ||||||| || || ||||| || || ||||| || || ||| Sbjct 318 TTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGA 259 Query 8402 GGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCAT 8460 || ||||||| ||| |||| || || || | || | | | | ||||| ||||| Sbjct 258 GGGGCAGCGATGAAGGCGATAATAAATACGGA-AGTTGTACTCAATAAGGTAGGGATCAT 200 Query 8461 CAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || ||||||||||| |||| || ||| |||| | ||| |||| |||||| ||||| Sbjct 199 CAAAACACCGAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCAGTTGCAGAA 140 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 8040 AGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATA 8099 |||| || | ||| ||| | ||||| | ||||| || | ||| || | | ||| | Sbjct 1 AGATTCCTAAAGGTATACCATCAGAAGAGCTTCCTTGGCCAATAGGGTAAATCAAGAAAA 60 Query 8100 CAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTA 8159 | ||| || || ||||| ||| || ||||| ||| ||||| ||||||||||| | Sbjct 61 CTACAGTAGCAGCTGCAACATGAGTTGAATATGCAACAGCAATCCAAGGACGCATACCCA 120 Query 8160 GACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 || || || ||||||||||||||||||||| || Sbjct 121 GATGGAAACTAAGTTCCCACTCACGACCCATATA 154 >seq680530 Length=586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 8151 GCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCA 8210 |||| || |||||| || ||||||||||||||||||||| || | | ||| | | Sbjct 206 GCATGCCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTA 147 Query 8211 GGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAG 8270 ||||| | | || || | |||||||||| ||||| | |||||||||| | | | Sbjct 146 AGAAGTTTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAGCAAATG 87 Query 8271 CTGCTTCCCAGATGGGATAGAAGTG 8295 | |||||||| || || || ||||| Sbjct 86 CAGCTTCCCAAATTGGGTAAAAGTG 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609824560612080