Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq542047 158 1e-33 seq1489163 132 6e-26 seq1482391 86.0 8e-12 >seq542047 Length=2783 Score = 158 bits (174), Expect = 1e-33 Identities = 314/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 2035 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 1976 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| | | ||| | | |||||| || |||| | |||| || Sbjct 1975 CCAGTCGAACGGGTTGGTGGCGTTGTAGAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGG 1918 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 1917 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 1858 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||||||| ||| ||| || |||| |||||||| || || ||||| || Sbjct 1857 CAGGGGAGCGCGTCACAGACAAACTCCCTCTCTATGTCCACGGCCTCAGAGACGATCTCG 1798 Query 127469 T-GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524 || | | | | || | | ||| | | ||| | || ||| || || || Sbjct 1797 AAGACGCGGGACTCGTCGAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CAG-GCGAA 1742 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 1741 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 1682 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| ||||||||||| | |||||| || ||||| || ||||| ||||||||||| ||||| Sbjct 1681 GAGGCCCCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCCTC 1622 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | | |||||||| ||| Sbjct 1621 AACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 1588 >seq1489163 Length=4104 Score = 132 bits (146), Expect = 6e-26 Identities = 391/593 (66%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| ||||||| ||| || | |||||| || | |||||| || Sbjct 1216 GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCT 1157 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | ||| || | || | || || ||| ||| ||| |||||||| Sbjct 1156 GAACCCGGGCGTGCGCATGGCCACCACGCTGAGGGACACGTCGGGGTCCAGCTTCTTGT- 1098 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| |||||| |||||||| ||| || |||| | Sbjct 1097 TGGCGCTGTGCACCCGGAGGATCTCCTCGCGGCCGCGCACGTCGGGCAGCCCGACGGACA 1038 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| |||| ||||| || ||||||| Sbjct 1037 CCTGCCGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCG 978 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || |||||||| | || ||| | || |||||| |||||||| || | || | Sbjct 977 TGGCGGCGATGACGATGACGCCGCTGTCACCGCGGAAGCCGTCCATCTCGGTGAGCAGCT 918 Query 12817 GATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTA 12875 | || | || || || | || || || | | || | |||| | ||| ||| Sbjct 917 GGTTCAGCGTCTGCTCCCTCTCGTCGTTACCCCCGCCGATG-CCCGTGCCGCGCTGCCGG 859 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| || ||||| ||||| || | ||||| || || ||| || Sbjct 858 CCGACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTCG 799 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | || ||||| | | || || || ||||| |||||||| | || | | || Sbjct 798 AACAGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCG 739 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 || || | || |||||| ||| || || |||||||| || ||| || || ||||| Sbjct 738 GA-CAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTT 680 Query 13055 CCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT--GGGATCCTGGCACC 13105 ||||||||| || || || || | ||||| | | |||||||| || || Sbjct 679 CCCCGTCCCCGGCGGGCCGGCCAGCA--GCACCCCCTTGGGGATCCTCGCCCC 629 >seq1482391 Length=7374 Score = 86.0 bits (94), Expect = 8e-12 Identities = 166/242 (69%), Gaps = 16/242 (7%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || | |||| |||||| || | | || || |||||||||||||||| Sbjct 3918 GTTGGTGGCAGCAACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAG 3859 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCA-CTG---- 12866 || ||||||| || || || | |||||| ||| | |||||| | ||| Sbjct 3858 TAGCTGATTGAGAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCC 3805 Query 12867 -CGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 | |||| | || || || |||||||| |||| || ||||| || || ||| || Sbjct 3804 TCTTTGCCTTCCAACAGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTCCTT 3745 Query 12926 GGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 ||| |||| |||| ||| || || | |||||| ||||| |||||||||||||| Sbjct 3744 GGC--CTTCTTGAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACG 3687 Query 12984 AA 12985 || Sbjct 3686 AA 3685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601377342090120