Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq542047 178 2e-39 >seq542047 Length=2783 Score = 178 bits (196), Expect = 2e-39 Identities = 504/768 (66%), Gaps = 30/768 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 2020 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 1961 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| |||| | || || ||| |||| | ||| || || || || Sbjct 1960 GGTGGCGTTGTAGAGCTTGTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 1901 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||| || | Sbjct 1900 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCACA 1841 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | ||||||| |||| || || || || || | || |||| |||| || |||| Sbjct 1840 GACAAACTCCCTCTCTATGTCCACGGCCTCAGAGACGATCTCGAAGACGCGGGACTCGT- 1782 Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 | ||||||| || |||| || | |||||||| || |||||||||||||| Sbjct 1781 --CGAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 1730 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| Sbjct 1729 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCGCTT 1670 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| | || ||| | | | | || ||||| ||||| ||| || | Sbjct 1669 CTTGAGCCAGAAGATGG-CACAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAGGCGA 1611 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 | || |||| | ||| | || ||| | | | | | |||| | |||||| Sbjct 1610 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGAAGGGCCCAG 1555 Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || ||| ||||| ||||||| ||| |||| |||| || | | ||||| Sbjct 1554 TCGGCC----TTGCGGCGCACGGCTGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 1499 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| | || ||| || | || ||| |||||||| || | ||| | || Sbjct 1498 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 1439 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 |||||||| ||||| ||| |||||| | ||||| |||||| || | Sbjct 1438 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 1379 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 1378 GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 1319 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTG 160404 ||| |||||||| || | |||||| ||| ||| || | |||||||| Sbjct 1318 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGCGTCGTGTCCCAGTG 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779433918175920