Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq360720 87.8 7e-12 seq533899 84.2 8e-11 seq41339 84.2 8e-11 >seq360720 Length=4201 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||||||| || ||||| ||||| ||||| || |||| | || | | || Sbjct 3262 GTTCTTACCAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGTCGGTCTCCAAGGCT 3321 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| || || ||||||||||||||||| || || || || || || ||||| || Sbjct 3322 GTTATTACAGTCCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 3381 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| || | || | | ||||| ||||| || || || || ||||| || Sbjct 3382 AGGATTGCTGGGTTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTGTCA 3441 Query 451445 TATGGA 451450 |||||| Sbjct 3442 TATGGA 3447 >seq533899 Length=8201 Score = 84.2 bits (92), Expect = 8e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 2683 GCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCAAGGATGCT 2742 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||| | | || || || ||||| || || |||||||| Sbjct 2743 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTGCTGCTCTG 2802 Query 451442 GCATATGGA 451450 | |||||| Sbjct 2803 TCTTATGGA 2811 >seq41339 Length=11645 Score = 84.2 bits (92), Expect = 8e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||||||||||| || || || || || || || || || ||| Sbjct 3323 ATGCAGATTTTTGTCAAGACACTGACTGGCAAGACCATCACCCTGGAGGTCGAGTCCTCT 3264 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || |||||||| || || || || || || Sbjct 3263 GACACCATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 3204 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || || ||||| ||||| | || ||||||| || || Sbjct 3203 CAGCGCCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 3144 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 3143 ATCCAGAAGGAGTCCACCCTTCACTTGGT 3115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1935679239826356