Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq539222 134 1e-25 seq1491419 129 4e-24 seq553040 127 2e-23 seq539905 96.9 3e-14 seq2649 86.0 5e-11 >seq539222 Length=7428 Score = 134 bits (148), Expect = 1e-25 Identities = 309/462 (67%), Gaps = 10/462 (2%) Strand=Plus/Plus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 || || || || ||| || |||| ||||| || ||||| | | || || || | Sbjct 2342 TCGATGCCCTCATACAGCGAGTCAATCTCAATGGTGGTTTGTGCAGTGGAGGAGAGGGTC 2401 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 | || || || ||||| |||||||| || || || | || | | | ||| | | | Sbjct 2402 CTCTTCGCCCGCTCACAAGCTGTCCTCAGCCTACGGAGAGCCCTGG--GGTTGCCACTGA 2459 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | || | || |||||||| |||| ||| | | || | | || |||| Sbjct 2460 TATCCTTCTTGTTCTTCCTCTTGAATTCTTGGACAAAGTGGTTGACCATCCTGTTGTCAA 2519 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || ||||| || | | ||||| || | || | | || | || | || |||| Sbjct 2520 AGTCCTCACCACCAAGGTGAGTATCACCAGCAGTGGACTTGACCTCAAAGATGCCCTCTT 2579 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | ||||| |||||| ||| |||||||| | ||||| || || |||||| Sbjct 2580 CAATGGTGAGAAGAGAGACATCAAAGGTGCCACCACCAAGGTCAAAGATGAGAACATTCT 2639 Query 518151 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | ||| || || ||||||||||| |||| ||||||||||||||| | Sbjct 2640 TCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTGGCT 2699 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| || || | || |||||| || |||||||| ||| ||||| || ||||| || | Sbjct 2700 CATTGATGATGCGCATAACATTTAGGCCAGCAATCACTCCAGCATCCTTGGTGGCCTGCC 2759 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || || || || || || ||||||||||| | || |||| Sbjct 2760 TCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACGACAGCAT 2801 >seq1491419 Length=5127 Score = 129 bits (142), Expect = 4e-24 Identities = 537/829 (65%), Gaps = 30/829 (4%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| || ||||| || | |||||||||||||||||||||||| | ||| | Sbjct 3200 GTCATCACACCCCCGGCTGTCTCCAGACCAAGAGAAAGAGGAGTGACATCCAATAGCAGC 3141 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || || | | || ||||| | || || || | |||||| || Sbjct 3140 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 3082 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 3081 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 3024 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | ||||| || || || ||||| | || || || ||||| | |||| ||| Sbjct 3023 TCCTGGAGAAGCTGCTGCACTTTGGGAATCCTAGTGGAACCACCAACCAGGACAACATCA 2964 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 2963 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCCACAGGCTCCATACA 2905 Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | || |||| || || || || || || | || | || | ||| | || Sbjct 2904 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTTGCCCGGGTGATGGTGG-AGTA 2848 Query 517850 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGA 517905 || ||||| || || |||| || |||| ||||| || || || ||| || || || Sbjct 2847 GAAGTCAATGCCCTCAAACAGCGAGTCAATCTCAATGGTGGTCTGCGCAGTGGAGGA-GA 2789 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 ||| | | ||||| | ||||| | |||||| || || || | ||| | | | ||| Sbjct 2788 GAGTCCTC--TTAGCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTCG--GGTTG 2733 Query 517966 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 | | | || |||| | || |||||||| || | ||| | | || | | Sbjct 2732 CCACTGATGTCCTTTTTGTTCTTCCTCTTGAACTCCTGGACAAAGTGGTTGACCATCCTG 2673 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| || ||||| || | | ||| | || | || ||| | || | || | Sbjct 2672 TTGTCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCTTTAACCTCAAAGATA 2613 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 || || |||| | | ||||| |||||| ||| ||||| || | ||||| || || Sbjct 2612 CCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGG 2553 Query 518144 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 |||||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 2552 ACATTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCT 2493 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| || || || || | | ||||| | |||||||| ||| ||||| || || Sbjct 2492 GTTGGCTCGTTGATGATACGAAGGACATTGATGCCAGCAATGACTCCAGCATCCTTGGTA 2433 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || || |||||||| ||||| | ||| |||| Sbjct 2432 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGTACAGTGACAACAGCAT 2384 >seq553040 Length=6571 Score = 127 bits (140), Expect = 2e-23 Identities = 528/822 (64%), Gaps = 16/822 (2%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | || || || || || | ||||||||| || || |||||||||| |||| | Sbjct 5124 GTCATGACTCCTCCAGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCAAGGAGGAGA 5065 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | | || | || || | | |||| ||| ||||| || || | ||||||||| Sbjct 5064 AGGTCCTGCACCTTCTCGTTCCCCTCACCACTAAGGATAGCAGCCTGGACGGCAGCACCA 5005 Query 517616 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 || ||||||||||||||||| |||| | || || || | || || ||||| || | Sbjct 5004 TAGGCAACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAGT 4947 Query 517674 TTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 ||| || || || | || |||| || | | || || ||||| | || | ||| Sbjct 4946 CCTGAAGCAGCTG-CTGAACTCTAGGGATTCTGGTGGAACCACCAACAAGCACGACATCA 4888 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 || | ||| | || |||| || | |||| | || || || || || | | Sbjct 4887 TGGATA-GTGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACTGGCTCCATGCA 4829 Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 517851 | || || | ||| || || || || | || || || | ||| || | Sbjct 4828 CTTCCTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAGAA 4769 Query 517852 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 ||||| ||| || || | |||||| | || || || || || | | ||||| || | Sbjct 4768 ATCAACTCCCTCAAAGAGAGAATCGATCTCGATGGTGGTCTGGGCAGTGGAAGAAAGGGT 4709 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG-CTTTTGCTGATTGATTCA 517970 | || || | ||||||| ||||| || || | || | | | | | | | | | Sbjct 4708 CCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTACC-ACTGA 4650 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | || | || |||||||| |||| ||| | | || | ||| || |||| Sbjct 4649 TATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACGGTTGTCAA 4590 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | ||| | || | || || | || | |||| || || | Sbjct 4589 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAAAATACCCTCCT 4530 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | |||| |||||| || |||||||| | ||||| ||||| |||||| Sbjct 4529 CAATGGTAAGGAGAGAGACATCAAAAGTGCCACCACCGAGGTCAAAGATAAGCACATTCT 4470 Query 518151 TTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | |||| | || ||||||||||| |||| || ||||| ||||| | Sbjct 4469 TCTCACCAACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCGGCAGCTGTTGGCT 4410 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 | || || || | || ||||||||||||||||| || ||||| || || || || | Sbjct 4409 CGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGGTAGCCTGCC 4350 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || ||||| || || || ||||| || || | |||||||| Sbjct 4349 TCTGGGAATCATTGAAGTAAGCAGGCACGGTGACAACGGCAT 4308 >seq539905 Length=5437 Score = 96.9 bits (106), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| || || ||||||| ||||| | || | || |||| |||| || | Sbjct 5163 ACATCAAAAGTACCGCCACCCAAGTCAAACACCAGAA---TCGTTTCGTTGTTTT---TC 5110 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| | Sbjct 5109 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 5050 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || ||||| | || ||||| || || ||| ||| || || || || || ||||| Sbjct 5049 AGCCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGCGAGTCATTGAAGTATGCT 4990 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 4989 GGAACAGTAA 4980 >seq2649 Length=10255 Score = 86.0 bits (94), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 ||||| |||||| ||| ||||| || | ||||| || || || ||| | || | Sbjct 6507 AAGAGACACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACGTTCTTCTCACCAAC 6448 Query 518161 T-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| || || ||||||||||| |||| |||||||| ||||| || || || || Sbjct 6447 ACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTTGGCTCGTTGATGAT 6388 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | ||||| | |||||||| || ||||| || || || || || || || || Sbjct 6387 ACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCCTGCCTCTGCGAGTC 6328 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || |||||||| ||||| | ||| |||| Sbjct 6327 ATTGAAGTATGCAGGTACAGTGACAACAGCAT 6296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3702332888517142