Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4698 127 2e-24 seq1489163 116 4e-21 seq542047 96.9 4e-15 seq4015 95.1 1e-14 seq18790 84.2 3e-11 seq38979 82.4 9e-11 >seq4698 Length=7391 Score = 127 bits (140), Expect = 2e-24 Identities = 259/384 (67%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| |||||||| |||||||| || ||||| || | ||||||||| Sbjct 6477 GAAGCCGTCCATCTCTGTGAGCAGCTGGTTAATTGTCTGCTCCCTCTCATCGTT------ 6530 Query 11652 CATACCACC--TGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705 | ||||| ||||| ||||| | | ||||| |||||||||||||||||||| || Sbjct 6531 CCCCCCACCCATGCCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGAC 6590 Query 11706 GATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAAC 11765 ||| || || ||||| |||| ||||| || || | || | ||| || || Sbjct 6591 GATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCGCCCAC 6650 Query 11766 ACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825 || ||||| | ||| ||||| | | || | || | |||||| || | ||| Sbjct 6651 GCCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTC 6710 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || |||| ||| | ||||| || ||||| || || || || | || |||| ||| Sbjct 6711 CCCGGCGACGGCCCTGGCGAGCAGCGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCA 6770 Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 ||| |||||||||||| || | ||| || || ||||||||||| || || Sbjct 6771 GCCCTTGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCGAC 6830 Query 11946 AATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 6831 GACCTCCTGCAGCTCGAGCTTGGC 6854 >seq1489163 Length=4104 Score = 116 bits (128), Expect = 4e-21 Identities = 275/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 1032 CGGTCGAAGCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCG 973 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||| | ||| | ||| |||||||| || ||||| |||||||| Sbjct 972 GCGATGACGATGACGCCGCTGTCACCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 913 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || | ||| ||||| || || || | ||||| |||| | ||| Sbjct 912 AGCGTCTGCTCCCTCTCGTCGTTACCCCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCG 856 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| ||||| Sbjct 855 ACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTCGAAC 796 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || ||| ||| || || || ||||||||||| | ||| | | | | | Sbjct 795 AGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCCGGA 737 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || | |||||| || | ||| || ||||| || || || || ||||| || Sbjct 736 CAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCC 677 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||| || || | || || || || | || ||||||| | || || Sbjct 676 CGTCCCCGGCGGGCCGGCCAGCAGCACCCCCTTGGGGATCCTCGCCCC 629 >seq542047 Length=2783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 1734 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCC 1675 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||||||| || || || |||||||||||||| || ||| Sbjct 1674 CGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCAG 1615 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| | ||||| || || Sbjct 1614 GCGAAGGCGACGATGCGCTCGGCGAA 1589 >seq4015 Length=6327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||||| ||||||||||| || ||||| |||||||| || || || |||||| Sbjct 3626 GTATATGTTAGATGTGTAGGGTTCAAAGCACTCGTTGTTGCCAAGAATCTGACTAGTGGA 3567 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||||||||||| |||||| ||||| Sbjct 3566 AGCAGTGGGCATGGGAGCCACCAGAAGAGAGTTTC 3532 >seq18790 Length=1537 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCG-T 136775 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || | Sbjct 1171 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACCTGCA 1230 Query 136776 TGGG--AACAGCTTTTAGATATATTTTTTG 136803 |||| ||| | |||| | | ||||||| Sbjct 1231 TGGGCCAACTGTTTTTTTTTTTTTTTTTTG 1260 >seq38979 Length=18682 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| | ||||| ||||| || |||||||||||||| || ||||| ||| || Sbjct 7398 GTAAATGTTCGAAGTGTATGGTTCAAAGCACTCATTGTTGCCAAGAATTTGACTAGTAGA 7457 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||| |||||||| ||||||| |||||| Sbjct 7458 AGCGGTGGGCATTGGAGCCACAAGAAGA 7485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577331156724600