Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq542047 114 1e-20 seq4698 102 9e-17 seq1482391 100 3e-16 seq38979 89.7 6e-13 >seq542047 Length=2783 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 1735 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 1676 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || || ||||| || || ||||||||||| ||||| || || Sbjct 1675 CCGCTTCTTGAGCCAGAAGATGGCACAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCA 1616 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | | ||||||||||||| Sbjct 1615 GGCGAAGGCGACGATGCGCTCGGCGAAG 1588 >seq4698 Length=7391 Score = 102 bits (112), Expect = 9e-17 Identities = 273/409 (67%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | ||||| || || ||||| || || | ||| | || |||||| Sbjct 6388 CGATCAAACCTCCCTGGCCGCAGAAGCGCCGAGTCGAGCACATCCGGCCTGTTGGTCGCG 6447 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || || ||||||||||| | || |||| Sbjct 6448 GCGAGCACGATGACACCGCTGTTTCCAGAG--AAGCCGTCCATCTCTGTGAGCAGCTGGT 6505 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 6506 TAATTGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATGCCGGCACCACGCTGCCTCCC 6563 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||| ||||||||||| |||||||| || || || || | ||| | || || Sbjct 6564 GACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAA 6623 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 ||| || | ||||| |||||||| || || || | ||| || || | | |||| Sbjct 6624 GAGGTCCCTGACCCTGGACGCGCCCACGCCGACGAAGAGCTCGACGAACTCAGACGCGGC 6683 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || |||||| || | || || || | ||| | |||||| || ||||| || Sbjct 6684 GCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCCCTGGCGAGCAGCGTCTTCCC 6743 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||| || |||| | |||| ||| | || |||||||| || Sbjct 6744 GGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 6791 >seq1482391 Length=7374 Score = 100 bits (110), Expect = 3e-16 Identities = 195/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 3965 TCAAAGCGTCCAGGTCTAAGCAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 3906 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| || || || | ||||||||||||||||| |||| || || || | | Sbjct 3905 ACAACAATGATGCCAGTGTTGCCCTCAAAACCATCCATCTCAGTCAGTAGCTGATTGAGA 3846 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| |||||| ||| | |||||| || || | |||| |||| Sbjct 3845 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTTCCA 3792 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 3791 ACAGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 3732 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| ||||| | ||| || |||||||||||||||||||| || Sbjct 3731 AGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 3685 >seq38979 Length=18682 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||| |||||| ||||| || ||| | |||| |||| | || ||| Sbjct 8672 GCAATTGATGCCAGATTGCACACAGCAGTTTCAGTGGGACTTGTGAACTCAACTATCTCT 8731 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || |||||||||||| |||||| || |||| ||| | ||| ||||| ||| ||||||| Sbjct 8732 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 8790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578316090484680