Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq507140 168 8e-37 seq68655 158 1e-33 seq216476 145 9e-30 seq539347 131 2e-25 seq550293 111 2e-19 seq428484 102 1e-16 seq542539 93.3 5e-14 seq1492040 91.5 2e-13 seq281357 91.5 2e-13 seq1511241 87.8 2e-12 seq398894 84.2 3e-11 seq988277 82.4 9e-11 seq250573 82.4 9e-11 >seq507140 Length=321 Score = 168 bits (186), Expect = 8e-37 Identities = 200/271 (74%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 181829 ATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTT 181888 |||| ||| || || |||||||| || || ||||| |||| ||||| ||||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 181889 GCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCAT 181948 ||||||||||| || || || |||| || || ||| | || ||| |||| || |||||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 181949 AATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTA 182008 ||||||||| | || || || ||||||||||| ||||| | | | |||| || | Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 182009 CTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCA 182068 || | || ||||| || | |||||| || || ||||| | | | |||||||| ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 182069 AATACTTTCAAAGCATTCGATTCAACTCAAG 182099 ||||| ||| || || | ||||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq68655 Length=5599 Score = 158 bits (174), Expect = 1e-33 Identities = 186/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 180081 GGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATAT 180140 |||||||||||||||||| || | | |||||||||| || ||||| || |||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 180141 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCA 180200 || |||| || || || | ||||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 180201 TTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAA 180260 || | ||| | ||||| | || || ||||| || |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 180261 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGC 180320 ||||||||||||||||| ||||| || ||||||||| | || |||| ||||| |||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 180321 GGTTCACTGTTC 180332 ||||| || ||| Sbjct 962 GGTTCCCTATTC 973 >seq216476 Length=3150 Score = 145 bits (160), Expect = 9e-30 Identities = 178/238 (75%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 181751 GGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGC 181809 ||||| ||| | | |||||||||| || ||| |||| | | | |||| || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 181810 GATTGCTTTTTCCGGTCCTATTGCTGTATTC-GTCTCTGTATTTCTCATCTATCCTCTGG 181868 || | || || ||||| |||| ||| || || || ||||| || | ||||| |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 181869 GACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTC 181928 | ||||| |||||||||||| ||||||||| ||||| || ||||| || | ||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 181929 TCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGC 181986 | ||| || | || ||||||||||||| | | || || || ||||||||||| ||||| Sbjct 2822 TTTTCTTCTA-GGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq539347 Length=3493 Score = 131 bits (144), Expect = 2e-25 Identities = 125/159 (79%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 180204 TCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCA 180263 ||||| | ||||| | || || ||||| || ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 180264 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGT 180323 |||||||||||||| ||||| || ||||||||| | || ||||| |||| ||||||||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 180324 TCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCT 180362 | || ||| | || ||||| ||||| |||| |||||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq550293 Length=8024 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 181767 AATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGT 181825 |||||||||||||||| ||| || | | ||| | || ||||| || | || || || Sbjct 7554 AATTTGAACTTGCTCGGTCTGTTCA-ATTACGATCTTATAATGCAATCTCGTTCTCTAGT 7496 Query 181826 CCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTC 181885 || |||||| | || || | | |||| | || ||||| || || ||||| |||||||| Sbjct 7495 CCAATTGCTATTTT-GTTTATCTATTCTTTATTTATCCACTCGGGCAATCTGGTTGGTTC 7437 Query 181886 TTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTT 181945 ||||| |||||||| | | || |||| || | ||| | | ||| |||| | || Sbjct 7436 TTTGCATCGAGTTTCAGCATAGCAACGATATTTAGATTCATCATTTTCTTCCAATGTTTA 7377 Query 181946 CATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTG 181985 |||||||||| | | || || || ||||||||||| |||| Sbjct 7376 CATAATTGGAGGTTGAACCCATTTCATATGATGGGAGTTG 7337 >seq428484 Length=423 Score = 102 bits (112), Expect = 1e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 182066 GCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACA 182125 |||||||| ||| || || | |||||||||| |||||||| ||||||||||| || Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 182126 GCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCAT 182185 || |||||||| ||||| || ||||| ||| |||| ||| |||||| | ||||| ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 182186 TTCTTTAT 182193 | ||||| Sbjct 337 CT-TTTAT 343 >seq542539 Length=11310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646 |||||| ||| ||| ||||| || || | ||||| || ||||||| | | | || Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706 |||||| || | ||||||| ||| || ||| ||||||||||||| | |||||||| Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 180707 TCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 |||||||||||| || ||| | || | || ||| Sbjct 6983 TCACAACTTCCCTCTAGACTTAGCTGATGTTGA 6951 >seq1492040 Length=4344 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 181844 TCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGT 181903 |||||||| || || ||||| |||| ||||| ||||||||||||| || ||||| | Sbjct 1179 TCTGTATTCCTTATTTATCCACTGGAGCAATCTGGTTGGTTCTTTGCACCTAGTTTTGAC 1238 Query 181904 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 || || ||||| || ||| | || ||| |||| || ||||||||||||||| ||| Sbjct 1239 GTAGCAGCGATATTTTCATTCATCCTTTTCGTCCAAGGATTTCATAATTGGACGTTCA 1296 >seq281357 Length=578 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || |||||||| | |||||||||||||| ||| Sbjct 459 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAATTGACTGGTCGTAGGTTCGAAT 518 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 519 CCTACTTGGGGAG 531 >seq1511241 Length=1106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||||| |||||||||| || ||||| | || ||||||| |||||||||||||||| ||| Sbjct 454 TTCCTTAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGTCTGGTCGTAGGTTCGAAT 395 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 394 CCTACTTGGGGAG 382 >seq398894 Length=318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| || | || | || || |||| ||||| Sbjct 130 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTT 189 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCAT 179857 ||| ||| ||||||| || || | ||| ||||| | || || |||||||||| Sbjct 190 CGGTGTTTTGATGATCCCTACCTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCAT 249 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||| || || || || || ||||| || ||||| || || ||||||| | | || Sbjct 250 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 309 Query 179918 TGGTAACAA 179926 ||| ||||| Sbjct 310 TGGAAACAA 318 >seq988277 Length=353 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||| |||||||| ||| Sbjct 226 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTGGTAGGTTCGAAT 167 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 166 CCTACTTGGGGAG 154 >seq250573 Length=1340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || |||||| | |||||||||||||| ||| Sbjct 457 TTCCTCAGTAGCTCAGTGGTAGAGCGGCCGGTTGTTAACTGACTGGTCGTAGGTTCGAAT 398 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 397 CCTACTTGGGGAG 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 598328438858280