Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq68655 140 4e-28 seq539347 136 4e-27 seq466961 87.8 2e-12 seq544533 86.0 7e-12 seq680530 82.4 9e-11 >seq68655 Length=5599 Score = 140 bits (154), Expect = 4e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTA 169824 || |||||||||||||| ||||||||| || || | || | ||| | ||| | Sbjct 752 GGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTCATGTTGCAGCTACTACTGCTATT 811 Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884 ||||| | ||||| ||||| | | || | |||||||||||| |||| ||||| Sbjct 812 TTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTGATGGTATGCCTTTAGGAATCTCT 871 Query 169885 GGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTC 169944 |||||||||||| ||||| | || ||||| |||||||| ||||| || |||||||| ||| Sbjct 872 GGTACTTTCAACATTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 931 Query 169945 CACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTC 169986 |||||| ||| |||| || | ||||| || || ||||| Sbjct 932 CACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCCCTATTC 973 >seq539347 Length=3493 Score = 136 bits (150), Expect = 4e-27 Identities = 124/154 (81%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 169858 TCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCA 169917 |||||||||||||| |||| ||||| |||||||||||||||||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGA 169977 ||||| ||||| || |||||||| ||||||||| ||| ||||| | | ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 169978 TCTTTATTCTCAGCAATGCATGGTTCACTTGTTA 170011 | ||||| | || ||||||||||| |||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTC-CTTGGTA 152 >seq466961 Length=778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 171426 GAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 171485 ||||| || || || ||||||||||| || || ||||| ||| | || || ||||| | Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 171486 GCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGT 171543 || |||||| || |||| || || || ||||| || | ||||||| ||||| || Sbjct 717 GCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTC 660 Query 171544 TACCAAGAGGTAACGCACTTTAA 171566 ||||| | || ||||| |||||| Sbjct 659 TACCACGTGGAAACGCTCTTTAA 637 >seq544533 Length=12290 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| || ||||| ||| | || || ||||| || ||||||||||| || || Sbjct 5479 TGGAGCAGATGTTTGCCATCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 5420 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | |||||||| ||||| Sbjct 5419 TGGTCCTGGCATGGGTCCTATTGGTGT 5393 >seq680530 Length=586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674 || |||||| | ||||| |||||||| |||||||| ||| || |||||| ||||| || Sbjct 50 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATAC 109 Query 169675 AATGGTGGTCCTTATCAG 169692 ||||||||||||||| || Sbjct 110 AATGGTGGTCCTTATGAG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567760988246880