Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq507140 120 3e-22 seq68655 116 4e-21 seq466961 109 6e-19 seq428484 104 3e-17 seq216476 98.7 1e-15 seq37697 91.5 2e-13 seq182135 89.7 6e-13 >seq507140 Length=321 Score = 120 bits (132), Expect = 3e-22 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 169712 ATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTT 169771 |||| ||| ||||| ||| || ||||| || ||||| | || || ||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 169772 GCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCAC 169831 || || ||||| ||| || | || || | ||| | | ||| | |||||||| || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 169832 AACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTG 169891 || ||||||||||| ||||| || |||||||| || || || | || || | || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 169892 CTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCA 169951 || | ||||| ||||| | || ||||| ||||| | | ||| |||||||| ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 169952 AATACTTTC 169960 ||||| ||| Sbjct 289 AATACCTTC 297 >seq68655 Length=5599 Score = 116 bits (128), Expect = 4e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 168196 GGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATAC 168255 || ||||| ||||||||| | | | ||||||||||| ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 168256 TCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGT 168315 || || | || || || | | ||| | ||| | | || ||| | ||| ||| || Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 168316 TTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAA 168375 || | ||||| ||||| | |||||||| || || |||||| ||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 168376 GCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGT 168435 || |||||||| || || |||||||| ||||| ||| | || | ||||| ||||| || Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 168436 GG 168437 || Sbjct 962 GG 963 >seq466961 Length=778 Score = 109 bits (120), Expect = 6e-19 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 170183 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGT 170242 |||||||| ||||||||||| ||||| |||||||| || || || || || || ||||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 170243 GCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTT 170302 || ||| ||||| || ||||| || |||||||| | || ||||| ||||| ||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 170303 CCGAGAGGTAACGCACT 170319 || | || ||||| || Sbjct 657 CCACGTGGAAACGCTCT 641 >seq428484 Length=423 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 169949 GCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 170008 |||||||| ||| || ||| | | || || || ||||| |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 170009 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCAT 170068 || |||||||| ||||| || ||||| ||| |||| ||||| || || |||||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 170069 TTTTT 170073 |||| Sbjct 337 CTTTT 341 >seq216476 Length=3150 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 169684 TTATAATGCTATTGCATTCTCTGGTCCTATTGCTG-TATTTGTCAGTGTCTTTCTTATCT 169742 ||||||||| || ||||||||||||| |||| || | ||||| || || ||| | | Sbjct 2951 TTATAATGCAATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTT 2892 Query 169743 ACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCA 169802 | ||||| || || || |||||||||| || ||||| ||| |||| || || Sbjct 2891 ATCCACTGGGGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTT 2832 Query 169803 GGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGG 169862 | ||| | | || || | |||||| || || |||| |||||| ||||| || ||||||| Sbjct 2831 GATTCATCCT-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGG 2773 Query 169863 GTGTAGCAGGAATCTTGGGCG 169883 | || || ||| || |||| Sbjct 2772 GAGTTGCCAAAATATTAGGCG 2752 >seq37697 Length=321 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 169684 TTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTA 169743 ||||||||| || ||||||||||| | |||| ||| ||||| || || ||||| || Sbjct 2 TTATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTA 61 Query 169744 CCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAG 169803 ||||| || || || |||||||||| || ||||| || | || || || | Sbjct 62 TCCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTG 121 Query 169804 GTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGG 169863 ||| | | || || | |||||| || || |||| |||||| ||||| || |||| ||| Sbjct 122 TTTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGG 180 Query 169864 TGTAGCAGGAATCTTGGGCG 169883 || || ||| || |||| Sbjct 181 AGTTGCCTAAATATTAGGCG 200 >seq182135 Length=1057 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 170179 AGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACT 170238 ||| |||||||| ||||||||||| ||||| |||||||| || || || || || || | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 170239 TCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCC 170289 |||||| || ||||| || ||||| || |||||||| | || ||||| Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCC 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563115488569560