Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq68655 159 4e-34 seq507140 138 1e-27 seq539347 122 1e-22 seq532379 109 6e-19 seq216476 109 6e-19 seq550293 100 3e-16 seq398894 96.9 4e-15 seq466961 95.1 1e-14 seq214663 89.7 6e-13 seq40677 89.7 6e-13 seq680530 82.4 8e-11 seq542539 82.4 8e-11 >seq68655 Length=5599 Score = 159 bits (176), Expect = 4e-34 Identities = 189/256 (74%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 164118 GGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTAC 164177 ||||||||||||||||| || || | |||||||||||||||||| |||||| || Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 164178 TCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCG 164237 || || | |||||||| | | || | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 164238 TTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAA 164297 || | ||| | ||||| | || |||||||| || |||||| ||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 164298 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGC 164357 ||||||||||||||||| ||||| || ||||| ||| | || | ||||| ||||| ||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 164358 GGTTCTCTGTTCAGTG 164373 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq507140 Length=321 Score = 138 bits (152), Expect = 1e-27 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 165604 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 165663 |||||||||| || || || || || || |||| ||||| ||||||| || || || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 165664 ATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTG 165723 ||| || || ||| | || || | ||| | || ||| | |||||||| ||||| || Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTG 173 Query 165724 GACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTC 165783 ||| ||||| || |||||||||||||| ||||| | | | |||| || |||| | Sbjct 174 GACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTATG 233 Query 165784 TGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATAC 165843 || || ||||| | || ||||| || ||||| | | | || ||||| | ||||||||| Sbjct 234 CGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 293 Query 165844 TTTCAAGGCATTTGACTCTACTCAAG 165869 ||| || ||| || | ||||||| Sbjct 294 CTTCTGTGCTTTTAACCCAACTCAAG 319 >seq539347 Length=3493 Score = 122 bits (134), Expect = 1e-22 Identities = 123/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 164241 TCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCA 164300 ||||| | ||||| | || |||||||| || ||||||| ||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 164301 GAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGT 164360 |||||||||||||| ||||| || ||||| ||| | || || ||| | ||||| |||||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 164361 TCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCT 164399 | || |||| ||| ||||| ||||| |||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq532379 Length=15352 Score = 109 bits (120), Expect = 6e-19 Identities = 166/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 165221 CGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165280 || || |||||||||||||| || |||||||| || | || ||||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 165281 GCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTG 165340 ||| | || ||||| |||| ||||| ||||| | || ||||||||| || | ||| Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCA-TGATTG 14503 Query 165341 GCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165400 || ||||||||| |||| || || ||| | || || | ||||||||| || || | Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAAT 14563 Query 165401 GCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTT 165453 | | | |||| | |||| || ||||| || || || ||||| ||||| Sbjct 14564 AGTTTAGCACATT---TGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTT 14612 >seq216476 Length=3150 Score = 109 bits (120), Expect = 6e-19 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 165521 GGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGC 165579 ||||||||| | || || |||||| | || ||| | || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 165580 TATTGCGTTCTCTGGTCCTATCGCTGTTTTT-GTTAGCGTCTTTCTCATCTACCCTCTGG 165638 || | ||||||||||| || | ||||||| ||| ||| || || | || || |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 165639 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTC 165698 | ||||| ||||||| || | || ||| || || ||||| || || | ||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 165699 TCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGC 165756 | ||| | | |||||| ||||| |||| ||||| || |||||||||||||| ||||| Sbjct 2822 TTTTCTT-CTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq550293 Length=8024 Score = 100 bits (110), Expect = 3e-16 Identities = 175/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564 ||||| || | ||| ||||||||| | | | | |||||| | || || ||| || | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT-T 7527 Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624 || | || ||||| || |||||||| |||| || ||| |||| ||| | | || | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCTT 7468 Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 || || || || || ||||| ||||||| || || | |||| | | ||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || || ||| | | ||| | ||| | || ||||| |||| ||||| || |||||||| Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 165745 GATGGGTGTTG 165755 |||||| |||| Sbjct 7347 GATGGGAGTTG 7337 >seq398894 Length=318 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | || | || || | || |||||||| ||| || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 163845 ATGATCCCTACGCTGCTTGCAGCA-ACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| || | | | || || || || |||||||| ||||||| | Sbjct 200 ATGATCCCTAC-CTTATTG-AGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCC 257 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| | | ||||| |||| Sbjct 258 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 317 Query 163963 A 163963 | Sbjct 318 A 318 >seq466961 Length=778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 166070 GAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGT 166129 ||||| || || ||||| || ||||| || ||||| ||||| || || || ||| ||||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 166130 GCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTG 166189 || ||| ||||| | ||||| || ||||| || || | ||||||||||| ||||| Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 166190 CCTAGGGGTAACGCGCT 166206 || | || ||||| || Sbjct 657 CCACGTGGAAACGCTCT 641 >seq214663 Length=1678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/248 (69%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 163810 ACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAA 163869 |||| || || || | || ||||| | ||| ||||||||||||| || ||| | | Sbjct 1383 ACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTAC-CTTATTGACGACA 1441 Query 163870 CCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGT 163928 | ||||| || || |||||||| |||| || | | || || || |||||||||||| Sbjct 1442 ACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCGT 1501 Query 163929 GAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCC 163988 || | |||| | ||||| | | || | ||||| || | |||||||| || | || Sbjct 1502 GAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCCT 1561 Query 163989 TCGTCCAATGCAATTGGTCTTCACTTCTACCCCATT-----TGGGAAGCCGCATCCCTTG 164043 | || || || | | ||||| ||||| ||| |||||||| ||||| ||| Sbjct 1562 ACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTTG 1621 Query 164044 ATGAATGG 164051 |||| ||| Sbjct 1622 ATGAGTGG 1629 >seq40677 Length=4500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 || |||||||||||||||||||| || || ||| |||||||||||||||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231 || || || | | |||||||| || | | ||| ||| || | || ||| | || ||| Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 164232 GG 164233 || Sbjct 34 GG 33 >seq680530 Length=586 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 164010 CACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCT 164069 ||||| ||||| ||||||||||| |||| |||||| ||| | ||||| ||||||||| Sbjct 62 CACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATACAATGGTGGTCCT 121 Query 164070 TTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGG 164129 | | || | || | ||||| | | ||| | | || ||||||||||||||| Sbjct 122 TATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 181 Query 164130 GAACTGTCTTACCGTCTTGGTATGC 164154 ||||| || |||||| || |||| Sbjct 182 GAACTTAGTTTCCGTCTGGGCATGC 206 >seq542539 Length=11310 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 164634 TTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGAC 164693 ||||| ||||| || || | | ||| || | ||||| | | | |||||||| || Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 164694 GTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTC 164753 | ||||||| ||| || ||| ||||||||||||| | ||||| |||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 164754 CCTCTGGATCTCGCTGCTGCTGA 164776 ||||| || | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545913651817080