Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq539347 156 5e-33 seq68655 145 8e-30 seq542539 96.9 4e-15 >seq539347 Length=3493 Score = 156 bits (172), Expect = 5e-33 Identities = 139/173 (80%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 168947 TCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCA 169006 ||||||||||||||| ||||||| ||||| || |||||||| ||| | |||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 169007 GAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGA 169066 ||||||||||| ||||||||||| ||||| ||| ||| ||||| || | ||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 169067 TCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGA 169119 | |||||| | || ||||||||||| | ||||| ||| | | ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGA 172 >seq68655 Length=5599 Score = 145 bits (160), Expect = 8e-30 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 168854 GGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAG-T 168912 |||||| | |||||||| |||||| |||||||| | || |||||| | | | | Sbjct 752 GGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTCATGT---TGCAGCTACTACTGCT 808 Query 168913 ATTC-CTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 ||| |||| | ||||| ||||| | | || | ||||||||||||| ||||||| Sbjct 809 ATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTGATGGTATGCCTTTAGGAATC 868 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || |||||| | ||| | |||||||| |||||||||||||| ||||||||||| Sbjct 869 TCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 928 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTC 169075 ||||| ||| ||| |||| ||| | ||||| || || |||||| Sbjct 929 TTCCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCCCTATTC 973 >seq542539 Length=11310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 169340 TTTAACTTTAACCAATCAGTTGTAGAT-GTTAACGGTAAGATCATTCCTACATGGGGTGA 169398 || || || || ||||| || || ||| ||||| ||| || ||| ||| |||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAA-GGTCGCATTATTGATACTTGGGCTGA 7035 Query 169399 CGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTT 169458 | | ||| | || ||||||||| ||||||| |||||| | ||||| ||||||||||| Sbjct 7034 TATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTT 6975 Query 169459 CCCACTAGACTTAGC 169473 ||| ||||||||||| Sbjct 6974 CCCTCTAGACTTAGC 6960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553281834627360