Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq539347 129 7e-25 seq68655 122 1e-22 seq544533 95.1 1e-14 seq466961 93.3 5e-14 seq542539 86.0 7e-12 >seq539347 Length=3493 Score = 129 bits (142), Expect = 7e-25 Identities = 133/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 172276 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCA 172335 |||||||||||||| |||| ||||| ||||| |||||||||||| | || ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 172336 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGA 172395 ||||| ||||| || |||||||| ||||||||| ||| ||||| | | || || || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 172396 TCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGA 172448 | ||||| | || ||||| ||||| || || || ||| | | ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGA 172 >seq68655 Length=5599 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTG 172242 |||||| | || ||||| ||| ||||||||||| | ||| |||| | |||| | Sbjct 752 GGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTCATGTTGCAGCTACTACTGCTATT 811 Query 172243 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 172302 ||| | | || || | ||| | | || | |||||||||||| |||| ||||| Sbjct 812 TTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTTTGATGGTATGCCTTTAGGAATCTCT 871 Query 172303 GGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTC 172362 ||||| |||||| ||||| | || ||||| |||||||| ||||| || |||||||| ||| Sbjct 872 GGTACTTTCAACATTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 931 Query 172363 CACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTC 172404 |||||| ||| |||| || | || || || || ||||| Sbjct 932 CACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCCCTATTC 973 >seq544533 Length=12290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| ||| | || |||||||| || ||||||||||| || || Sbjct 5479 TGGAGCAGATGTTTGCCATCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 5420 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 5419 TGGTCCTGGCATGGGTCCTATTGGTGT 5393 >seq466961 Length=778 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 173848 GAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 173907 |||||||| || || ||||||||||| || || ||||| ||| | || || ||||| | Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 173908 GCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTA 173967 || |||||| || || ||||| || ||||| || | |||| || ||||| || || Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 173968 CCAAGAGGTAACGCACTTTAA 173988 ||| | || ||||| |||||| Sbjct 657 CCACGTGGAAACGCTCTTTAA 637 >seq542539 Length=11310 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 172669 TTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGAC 172728 ||||| ||||| ||||| || || ||| | | ||| ||| || ||| |||| ||| Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 172729 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTC 172788 | | ||| | || ||||| ||| |||||||||||||| || | ||||| ||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 172789 CCATTAGACCTTGCT 172803 || ||||| | ||| Sbjct 6973 CCTCTAGACTTAGCT 6959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576424641257520