Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq68655 156 5e-33 seq507140 150 2e-31 seq216476 147 2e-30 seq539347 140 4e-28 seq550293 118 1e-21 seq428484 100 3e-16 >seq68655 Length=5599 Score = 156 bits (172), Expect = 5e-33 Identities = 188/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 162718 GGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATAC 162777 || ||||| |||||||| || || | ||||||||||| ||||| || ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 162778 TCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 162837 || || | ||||||||| | | || | ||| || | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 162838 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAA 162897 || | ||| | ||||| || || ||| |||||| |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 162898 GCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGT 162957 |||||||||||||| || |||||||| ||||||||||| ||| | || ||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 162958 GGTTCACTGTTCAGTG 162973 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq507140 Length=321 Score = 150 bits (166), Expect = 2e-31 Identities = 182/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 164026 ATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTC 164085 |||| ||| || ||| ||| || || || || || |||| ||||| |||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 164086 GCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCAT 164145 || || |||||| || ||| | || || ||||| || | ||| | |||||||||||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 164146 AACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTG 164205 || ||||| |||||||| || ||||||||||||||||| | || |||| | || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 164206 CTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCA 164265 |||| |||||||| |||| || || ||||| || | | ||| || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 164266 AACACCTT 164273 || ||||| Sbjct 289 AATACCTT 296 >seq216476 Length=3150 Score = 147 bits (162), Expect = 2e-30 Identities = 201/278 (72%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 163948 GGTTTCATGCTTCGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCCTACAATGCG 164007 ||||||||| | || |||||||||| || ||| ||| | ||| || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGCGACTTTATAATGCA 2942 Query 164008 ATTGCTTTCTCTGGTCCTATTGCTGTCTTC-GTTAGTGTCTTTCTCATCTACCCTCTGGG 164066 || | ||||||||||| |||| ||| || ||| || || || | || || ||||| Sbjct 2941 ATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGGG 2882 Query 164067 TCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTT 164126 ||||| |||||||||| | || |||||| || ||||| || || ||||| || | Sbjct 2881 GCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCCT 2822 Query 164127 ATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGG 164186 ||| ||| |||||||||||| |||| |||||||| || ||||||||||||||||| Sbjct 2821 TTTC-TTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCAA 2763 Query 164187 TATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAG 164224 ||| |||||| || | | || ||||||| |||| Sbjct 2762 AATATTAGGCGTGGCTCTACGATGCACTATTCATGGAG 2725 >seq539347 Length=3493 Score = 140 bits (154), Expect = 4e-28 Identities = 127/159 (80%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 162841 TCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCA 162900 ||||| | ||||| || || ||| |||||| ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 162901 GAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGT 162960 ||||||||||| || |||||||| ||||||||||| ||||| || |||| ||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 162961 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 162999 | || |||| ||| ||||| ||||| ||||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq550293 Length=8024 Score = 118 bits (130), Expect = 1e-21 Identities = 179/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 163933 GCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAAT 163991 || ||||| | || ||||||||| | | |||||||||||||||| ||| || | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTG-TTCAATT 7527 Query 163992 CAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCT 164051 || | || ||||| || | |||||| |||| |||||| | || ||| | | || | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTA-TCTATTCTT 7468 Query 164052 CATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAAT 164111 || || || || || ||||| |||||||||| || | ||| | | ||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 164112 CTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATAT 164171 || |||||| || | ||| | ||| | || ||||| |||| |||||||| || ||||| Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 164172 GATGGGAGTTG 164182 ||||||||||| Sbjct 7347 GATGGGAGTTG 7337 >seq428484 Length=423 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 164263 GCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 164322 ||||| ||||| || ||| | | || || || ||||| |||||||| ||||||||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 164323 GCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCAT 164382 || |||||||| ||||| || ||||| |||||||| ||||| || || || ||| | ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 164383 TTTTT 164387 |||| Sbjct 337 CTTTT 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546559818551400