Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq68655 174 2e-38 seq539347 143 3e-29 seq507140 125 8e-24 seq532379 118 1e-21 seq216476 109 6e-19 seq398894 107 2e-18 seq542539 105 7e-18 seq550293 96.9 4e-15 seq214663 96.9 4e-15 seq182135 93.3 5e-14 seq428484 84.2 2e-11 seq680530 82.4 8e-11 seq37697 82.4 8e-11 >seq68655 Length=5599 Score = 174 bits (192), Expect = 2e-38 Identities = 192/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 167421 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 167480 ||||||||||||||||| || || | ||||||||||| ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 167481 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 167540 || |||| || || || | ||||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAA 167600 || | ||| | |||||| | || ||||||||||| |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 167601 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGC 167660 ||||||||||||||||| ||||| || ||||| ||| | || | ||||| ||||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 167661 GGTTCTCTGTTCAGTG 167676 ||||| || ||||||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq539347 Length=3493 Score = 143 bits (158), Expect = 3e-29 Identities = 128/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 167544 TCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCA 167603 ||||| | |||||| | || ||||||||||| ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 167604 GAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGT 167663 |||||||||||||| ||||| || ||||| ||| | || || ||| | |||||||||||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 167664 TCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCT 167702 | || |||| ||| ||||| ||||| |||| |||||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq507140 Length=321 Score = 125 bits (138), Expect = 8e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 168893 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 168952 |||||||||| || || || || || || |||| ||||| ||||||| || || || Sbjct 54 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTTGCGCC 113 Query 168953 ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTG 169012 ||| || || || | || || |||||| | || ||| | |||||||| ||||| || Sbjct 114 GAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTG 173 Query 169013 GACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTC 169072 ||| |||| ||||||||||||||||| || || | | || || | || |||| | Sbjct 174 GACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTGCTATG 233 Query 169073 TGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATAC 169132 || |||||||| | || ||||| || ||||| | | | || ||||| |||||||| Sbjct 234 CGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATAC 293 Query 169133 TTTC 169136 ||| Sbjct 294 CTTC 297 >seq532379 Length=15352 Score = 118 bits (130), Expect = 1e-21 Identities = 168/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 168510 CGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 168569 ||||| |||||||||||||| || |||||||| || | || ||||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 168570 GCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTG 168629 ||| | || ||||| |||| ||||| |||| || || ||||||||| || | ||| Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCA-TGATTG 14503 Query 168630 GCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGAT 168689 || ||||||||| |||| ||| || ||| | || || | |||| ||| || || || Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGCCAAT 14563 Query 168690 TCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTT 168742 | | | |||| | |||| || ||||| || || |||||||| ||||| Sbjct 14564 AGTTTAGCACATT---TGTTGCTACTATGGGG-CCCGAAGCACAAGGAGATTT 14612 >seq216476 Length=3150 Score = 109 bits (120), Expect = 6e-19 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 168810 GGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGC 168868 ||||||||| | || || ||||||| | || ||| | || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 168869 TATTGCGTTCTCTGGTCCTATCGCTGTTTTT-GTTAGCGTCTTTCTCATCTACCCTCTGG 168927 || | ||||||||||| || | ||||||| ||| ||| || || | || || |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 168928 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTC 168987 | ||||| ||||||| || | || ||| || || |||| || || ||||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 168988 TCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGC 169045 | ||| | | |||||| ||||| |||| |||| ||||||||||||||||| || || Sbjct 2822 TTTTCTT-CTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq398894 Length=318 Score = 107 bits (118), Expect = 2e-18 Identities = 136/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | || |||||| | || | ||| || |||| |||||||| ||| | Sbjct 139 CTTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTT 198 Query 167147 GATGATCCCTACGTTGCTTGCAGCA-ACCATCTGT-TTCATCATCGCCTTCGTCGGTGCT 167204 |||||||||||| || ||| || | | | || || || || ||||||||| ||| ||| Sbjct 199 GATGATCCCTACCTT-ATTG-AGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCC 256 Query 167205 CCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAAC 167264 ||||| || || || |||||||| || || || ||| ||||||| | | ||||| ||| Sbjct 257 CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAAC 316 Query 167265 AA 167266 || Sbjct 317 AA 318 >seq542539 Length=11310 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 167937 TTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGAC 167996 ||||| ||||| || ||| | ||||||||| ||| || | ||||||||| || Sbjct 7093 TTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATACTTGGGCTGAT 7034 Query 167997 GTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 168056 | ||||||||||| || ||| ||||||||||||| | |||||||||||||||||| Sbjct 7033 ATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGCTCACAACTTC 6974 Query 168057 CCTCTCGACCTTGCTGCTGCTGA 168079 ||||| ||| | |||| || ||| Sbjct 6973 CCTCTAGACTTAGCTGATGTTGA 6951 >seq550293 Length=8024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 ||||| || | ||| ||||||||| | | | | |||||||| || || ||| || | | Sbjct 7585 GCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAAT-T 7527 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || | || ||||| || |||||||| |||| || ||| |||| ||| | | || | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCTT 7468 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || || || ||||| ||||||| || || | |||| | | || | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || ||||| | | ||| | ||| | || ||||| |||| |||| ||||||||||| Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 169034 GATGGGTGT 169042 |||||| || Sbjct 7347 GATGGGAGT 7339 >seq214663 Length=1678 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/265 (69%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || |||| | |||| ||||| || |||| ||||| | ||| ||||||||||| Sbjct 1367 TGGATAACTAGCAGTGACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCT 1426 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || ||| | | | ||||| || || ||||||||| ||| || | || || || Sbjct 1427 ACCTT-ATTGACGACAACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGA 1485 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || || | ||| ||||||| | | || | ||||| || | ||| Sbjct 1486 TATTGATGGTATTCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTC 1545 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT-----CTGG 167330 ||||| || | ||| ||||| || || | | ||||| || || || ||| Sbjct 1546 TGGTGTTATTATCCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGG 1605 Query 167331 GAAGCAGCAACCCTCGACGAGTGGT 167355 ||||| ||| | | || ||||||| Sbjct 1606 GAAGCTGCATCTGTTGATGAGTGGT 1630 >seq182135 Length=1057 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 169355 AGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCT 169414 ||| |||||||| || |||||||| ||||| ||||| || || || || ||||| ||| | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 169415 TCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGT 169474 |||||| || | ||| || ||||| |||||||| || || | |||||| |||| || Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGT 836 Query 169475 ---ACTTCC 169480 |||||| Sbjct 837 TTGACTTCC 845 >seq428484 Length=423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 169125 GCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACT 169184 |||||||| ||| || ||| || ||||| || || || || ||||||||||| ||| Sbjct 217 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACT 276 Query 169185 GCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCAT 169244 || ||||| || ||||| || ||||||||| |||| || ||||| | ||||| ||| Sbjct 277 GCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACAT 336 Query 169245 TTCTTTAT 169252 | ||||| Sbjct 337 CT-TTTAT 343 >seq680530 Length=586 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 167313 CACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCT 167372 ||||| || || || |||||||| ||| || |||||||| ||||||||||||||| Sbjct 62 CACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATACAATGGTGGTCCT 121 Query 167373 TTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGG 167432 | | || | ||| | ||||| | |||| | | |||||||||||||||||| Sbjct 122 TATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 181 Query 167433 GAACTCTCTTACCGTCTCGGTATGC 167457 ||||| || |||||| || |||| Sbjct 182 GAACTTAGTTTCCGTCTGGGCATGC 206 >seq37697 Length=321 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/185 (70%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 168861 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTAC 168920 || ||||| || | ||||||||| | || | |||||||||| ||| || || || || Sbjct 3 TATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTAT 62 Query 168921 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGA 168980 || ||||| ||||| | ||||| || | || ||| || | | || || || | Sbjct 63 CCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTGT 122 Query 168981 TTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGT 169040 ||| | || ||| | | |||||| || || |||| |||| ||||||||||||| ||| Sbjct 123 TTCATCCTTTTCTT-CTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGGA 181 Query 169041 GTAGC 169045 || || Sbjct 182 GTTGC 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549524030026800