Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq539347 150 3e-31 seq68655 145 1e-29 seq214663 100 4e-16 seq398894 84.2 3e-11 >seq539347 Length=3493 Score = 150 bits (166), Expect = 3e-31 Identities = 138/173 (80%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 215750 TCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCT 215809 ||||||| |||||| | ||||||||||| || ||||||| ||| |||| |||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 215810 GAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGT 215869 ||||||||||| || ||||| |||||||||||||||||||| ||| |||| ||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 215870 TCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGA 215922 | | ||| |||| ||||| ||||| | || || ||| | | ||||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGA 172 >seq68655 Length=5599 Score = 145 bits (160), Expect = 1e-29 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | |||||| | |||||||| |||||| || || || | Sbjct 729 AGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATATTCAGCTC 788 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCC-ATTCGGTCAGGGTTCTTTCTCT 215752 ||| | ||| | ||| | ||| | | || || ||| | | || |||| | | Sbjct 789 ATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGCTTTTT-T 847 Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812 |||| |||||| | ||||||||||| || |||||| ||| |||| |||||||| ||| Sbjct 848 GATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAGGCAGAG 907 Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTC 215871 |||||||| || ||||| |||||||||||||||||| | |||||||| ||||| ||||| Sbjct 908 CACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTC 966 >seq214663 Length=1678 Score = 100 bits (110), Expect = 4e-16 Identities = 175/252 (69%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 215317 TGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGC 215376 |||||||||| | ||| | || |||||| |||| | ||||| ||| ||| | | | Sbjct 1381 TGACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTA-CCTTATTGACG- 1438 Query 215377 TACCACTTGT---TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAAT 215433 || |||| | || || | || |||||||| || | || || ||||| || || || Sbjct 1439 -ACAACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTAT 1497 Query 215434 CAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 215493 | |||| ||| ||||||||||| | || | ||||| || | |||||||| | || | Sbjct 1498 TCGTGAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTAT 1557 Query 215494 ACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT-----CTGGGAAGCAGCAACA 215548 |||| ||| || ||| |||| ||||| ||||| || |||||||| ||| | Sbjct 1558 CCCTACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCT 1617 Query 215549 GTTGACGAATGG 215560 ||||| || ||| Sbjct 1618 GTTGATGAGTGG 1629 >seq398894 Length=318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| |||| | | ||| | || ||||| ||||| | ||||| ||| ||| | | | Sbjct 161 ACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTA-CCTTATTG-A 218 Query 215375 GCTACCACTT--GT-TTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 | ||| |||| || || || | || ||||||||||| ||||| || ||||| || || Sbjct 219 G-TACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGT 277 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472 || | ||||| ||| ||||||||||| | ||||| ||||| Sbjct 278 ATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730350340221360