Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq68655 178 2e-39 seq216476 161 1e-34 seq550293 156 5e-33 seq507140 156 5e-33 seq539347 143 3e-29 seq37697 134 2e-26 seq542539 102 1e-16 seq214663 102 1e-16 seq466961 96.9 4e-15 seq1492040 95.1 1e-14 seq532379 89.7 6e-13 seq182135 82.4 9e-11 >seq68655 Length=5599 Score = 178 bits (196), Expect = 2e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 182127 GGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATAC 182186 || ||||||||||||||| || || | | ||||||||||| ||||| ||| ||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 182187 TCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCG 182246 || |||| || || || | ||||| | ||||| | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 182247 TTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAA 182306 || | |||| ||||| | |||||||| || || |||||| |||| | || ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 182307 GCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGT 182366 || ||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 182367 GGTTCACTGTTTAGTG 182382 ||||| || || |||| Sbjct 962 GGTTCCCTATTCAGTG 977 >seq216476 Length=3150 Score = 161 bits (178), Expect = 1e-34 Identities = 203/276 (74%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 183508 GGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCT 183567 ||||||||| | || || ||||||| || ||| | ||| | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGTTGCGACTTTATAATGCA 2942 Query 183568 ATTGCGTTCTCTGGTCCTATTGCTGTTTTT-GTCAGTGTATTCCTTATCTATCCACTGGG 183626 || | ||||||||||| |||| ||||||| || ||||||||| | ||||||||||| Sbjct 2941 ATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGGG 2882 Query 183627 TCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATT 183686 || ||| |||||||||| || ||||| || |||||||| || ||| ||||| | | Sbjct 2881 GCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCCT 2822 Query 183687 GTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGG 183746 || |||| || || || || |||| ||| ||||| || ||||||||||||||||| Sbjct 2821 -TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCAA 2763 Query 183747 TATACTAGGAGGAGCACTACTCAGTGCTATCCATGG 183782 ||| |||| | || |||| | |||| ||||| Sbjct 2762 AATATTAGGCGTGGCTCTACGATGCACTATTCATGG 2727 >seq550293 Length=8024 Score = 156 bits (172), Expect = 5e-33 Identities = 186/251 (74%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 ||| ||||| | || ||||||||| | | | |||||||||||||| | || | Sbjct 7586 TGCTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAATT 7527 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || |||| ||||| || |||||||| |||| |||||| |||| | | | ||||| | Sbjct 7526 ACGATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTA-TCTATTCTT 7468 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 ||| |||||||| || || ||| |||||||||||| | |||||| | ||||| | || Sbjct 7467 TATTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGAT 7408 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||||||||| | | ||| | || |||| || || |||| ||| ||||| || ||||| Sbjct 7407 ATTTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATAT 7348 Query 183732 GATGGGAGTTG 183742 ||||||||||| Sbjct 7347 GATGGGAGTTG 7337 >seq507140 Length=321 Score = 156 bits (172), Expect = 5e-33 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 183586 ATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 183645 |||| ||||||||| |||||||||||| |||||||||| || ||| ||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 183646 GCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCAC 183705 || || ||||| || |||||| | || ||| ||||| | | ||| | || || || || Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 183706 AACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTA 183765 || |||||||| ||||| || ||||||||||||||||| | || |||| | || || Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 183766 CTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCA 183825 || | ||||| ||||| | || ||||| || || | | ||| || || || ||| Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 183826 AACACATTCAAGGCATTTGATTCCACTCAAG 183856 || || ||| || ||| | | ||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq539347 Length=3493 Score = 143 bits (158), Expect = 3e-29 Identities = 128/159 (81%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 182250 TCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCT 182309 || |||| ||||| | |||||||| || || ||||||| |||| | || ||||| || Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 182310 GAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGT 182369 ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 182370 TCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCT 182408 | || || | ||| ||||| ||||| ||||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq37697 Length=321 Score = 134 bits (148), Expect = 2e-26 Identities = 169/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 183558 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTA 183617 ||| ||||| || | ||||||||| | |||| ||||||||| ||||||||||| || Sbjct 2 TTATAATGCAATCCCATTCTCTGGTTCAATTGTTGTTTTTGTTTTCGTATTCCTTATTTA 61 Query 183618 TCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAG 183677 ||||||||| || ||| |||||||||| || ||||| || |||| || || ||| | Sbjct 62 TCCACTGGGGCAATCTGGCTGGTTCTTTGTGCCGAGTTTTGGTATAGCTGCGATATTTTG 121 Query 183678 ATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGG 183737 ||| | | || |||| || || || || |||| ||| ||||| || ||||||| ||| Sbjct 122 TTTCATCCT-TTTCTTCTAGGATTTCAAAATTGGATGTTGAACCCATTTCATATGACGGG 180 Query 183738 AGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 |||||| ||| |||| | || |||| | |||| ||||| || || Sbjct 181 AGTTGCCTAAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAGTGAC 231 >seq542539 Length=11310 Score = 102 bits (112), Expect = 1e-16 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 182633 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACAC 182692 |||||| ||| ||| ||||| || || | ||||| || | ||||| | || | || Sbjct 7102 CCTCAAGCGTT-CAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 182693 TTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 182752 |||||| ||| | | ||||||||| |||||| |||||||||||||| | ||||| || Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 182753 ACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 ||||||||||| ||||| | |||| || ||| Sbjct 6983 TCACAACTTCCCTCTAGACTTAGCTGATGTTGA 6951 >seq214663 Length=1678 Score = 102 bits (112), Expect = 1e-16 Identities = 173/248 (70%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 181819 ACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAA 181878 |||||||||| || |||| |||||| |||| |||||||||| || | ||| || ||| Sbjct 1383 ACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTACCTTATTGACGACAA 1442 Query 181879 CCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGC 181937 | ||||| || || | || ||| | || || | || || ||||| || ||||| || Sbjct 1443 CT-TCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCGT 1501 Query 181938 GAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCA 181997 || | || ||||||| | | || | ||||| || | |||||||| | || |||| Sbjct 1502 GAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCCT 1561 Query 181998 TCCTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGG-----AAGCTGCCTCACTTG 182052 | || || || | | ||||| |||||||| |||| ||||||| || ||| Sbjct 1562 ACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTTG 1621 Query 182053 ATGAGTGG 182060 |||||||| Sbjct 1622 ATGAGTGG 1629 >seq466961 Length=778 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 184057 GAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGT 184116 |||||||| ||||||||||| ||||| || || || || ||| | || || || | ||| Sbjct 777 GAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCGT 718 Query 184117 GCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTA 184176 || ||| | ||| || ||||| || ||||| ||| ||||||| || || ||||| || Sbjct 717 GCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCTA 658 Query 184177 CCTAGAGGCAATGCTCTTTGATG 184199 || | || || ||||||| ||| Sbjct 657 CCACGTGGAAACGCTCTTTAATG 635 >seq1492040 Length=4344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 183603 TGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGT 183662 |||||||||||| |||||||||| || ||| |||||||||||||||||||| | || Sbjct 1181 TGTATTCCTTATTTATCCACTGGAGCAATCTGGTTGGTTCTTTGCACCTAGTTTTGACGT 1240 Query 183663 AGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCC 183722 |||||| || ||| |||| | | ||| | || || || || || |||||||| |||| Sbjct 1241 AGCAGCGATATTTTCATTCATCCTTTTCGTCCAAGGATTTCATAATTGGACGTT-CACCC 1299 Query 183723 CTTC 183726 ||| Sbjct 1300 GTTC 1303 >seq532379 Length=15352 Score = 89.7 bits (98), Expect = 6e-13 Identities = 126/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 183208 CGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTT 183267 || || || || || ||||| || |||||||| || | || |||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 183268 GCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTT 183327 || | || ||||| |||| || ||| ||||||| || ||||||||||||| || | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCAT-GATTG 14503 Query 183328 GCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGC 183383 ||| ||||||| | ||||| ||| ||| | || |||| || || || ||||| Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTTTCTACCCCTGC 14559 >seq182135 Length=1057 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 184053 AGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACT 184112 ||| |||||||| ||||||||||| ||||| || || || || ||| | || || || | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 184113 ACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGT 184172 ||||| || | ||| || ||||| || ||||| ||| ||||||| || ||||||| Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGT 836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 599601951936600